Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5447

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5446: 13814 - HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909, at 113170 to 113689 13814 mRNA_5447: 13815 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 113720 to 116134 13815 mRNA_5448: 13816 - BLAST GQ67_01206T0 [Komagataella phaffii], at 116614 to 117202 13816

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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112,833 - 1.3
112,834 - 0.2
112,845 - -2.3
112,873 + 0.6
112,893 + 0.1
112,981 - 1.5
112,996 - -0.8
113,026 - 0.2
113,721 - 0.3
113,845 + -0.1
113,850 - 1.1
113,855 + -0.9
113,882 + 0.7
113,993 - 13815 mRNA_5447 0.11 2.3
114,144 - 13815 mRNA_5447 0.18 0.8
114,405 - 13815 mRNA_5447 0.28 1.2
114,405 + 13815 mRNA_5447 0.28 -0.9
114,447 + 13815 mRNA_5447 0.30 0.7
114,488 + 13815 mRNA_5447 0.32 0.6
114,594 + 13815 mRNA_5447 0.36 0.8
114,715 - 13815 mRNA_5447 0.41 3.3
114,887 - 13815 mRNA_5447 0.48 1.7
115,020 + 13815 mRNA_5447 0.54 -0.8
115,170 - 13815 mRNA_5447 0.60 0.3
115,346 - 13815 mRNA_5447 0.67 -0.6
115,360 - 13815 mRNA_5447 0.68 -0.2
115,421 + 13815 mRNA_5447 0.70 1.9
115,460 + 13815 mRNA_5447 0.72 1.6
115,862 + 13815 mRNA_5447 0.89 1.9
115,997 - 0.4
116,016 + 0.5
116,034 - 0.4
116,041 + 0.1
116,056 - 0.1
116,083 + -0.9
116,203 - 1.5
116,208 - 0.4
116,619 + -0.1
116,633 + 0.7
116,659 - 2.5
116,803 - 13816 mRNA_5448 0.32 -0.7
116,803 + 13816 mRNA_5448 0.32 -0.3
116,803 - 13816 mRNA_5448 0.32 -0.6
116,894 + 13816 mRNA_5448 0.48 1.5
116,926 + 13816 mRNA_5448 0.53 0.1
117,073 + 13816 mRNA_5448 0.78 0.2