Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5425

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5424: 13792 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 68468 to 70424 13792 mRNA_5425: 13793 - K12735 PPIL4 peptidyl-prolyl cis-trans isomerase-like 4, at 70571 to 72264 13793 mRNA_5426: 13794 - K06944 K06944 uncharacterized protein, at 72728 to 74932 13794

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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69,709 + 13792 mRNA_5424 0.63 -2.4
69,757 + 13792 mRNA_5424 0.66 -0.6
69,820 - 13792 mRNA_5424 0.69 0.8
69,873 + 13792 mRNA_5424 0.72 1.6
69,891 + 13792 mRNA_5424 0.73 -2.2
70,010 + 13792 mRNA_5424 0.79 1.2
70,045 - 13792 mRNA_5424 0.81 -0.4
70,153 + 13792 mRNA_5424 0.86 0.3
70,186 - 13792 mRNA_5424 0.88 0.7
70,186 - 13792 mRNA_5424 0.88 -0.9
70,234 + -1.1
70,343 - -0.6
70,343 + -1.7
70,494 - -2.2
70,512 - 0.7
70,535 + -0.1
70,724 - -0.4
70,810 - 13793 mRNA_5425 0.14 2.8
70,925 - 13793 mRNA_5425 0.21 -0.6
71,048 - 13793 mRNA_5425 0.28 -1.0
72,379 - -0.8
72,650 + -0.2
72,855 + 0.8
72,976 - 13794 mRNA_5426 0.11 1.6
73,064 - 13794 mRNA_5426 0.15 1.7
73,104 - 13794 mRNA_5426 0.17 -0.3
73,138 + 13794 mRNA_5426 0.19 -0.0
73,147 + 13794 mRNA_5426 0.19 0.4
73,149 - 13794 mRNA_5426 0.19 -0.1
73,220 - 13794 mRNA_5426 0.22 0.3