Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5422

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5421: 13789 - Interpro Domain of unknown function (DUF5102) 0, at 62877 to 64571 13789 mRNA_5422: 13790 - HMMPfam-Domain of unknown function (DUF336)-PF03928,SUPERFAMILY--SSF143744, at 64822 to 65544 13790 mRNA_5423: 13791 - K01426 E3.5.1.4, amiE amidase, at 65728 to 67986 13791

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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64,122 - 13789 mRNA_5421 0.73 -0.3
64,195 - 13789 mRNA_5421 0.78 1.6
64,476 + -0.6
64,484 + 1.5
64,500 + -1.4
64,503 - -0.7
64,521 + -0.0
64,619 + -2.6
64,621 - -0.3
64,623 - 1.7
64,624 + 0.1
64,655 - -0.5
64,655 - 0.3
64,730 + -0.7
64,772 + 1.6
64,799 + 1.0
64,822 - 0.2
64,895 - 13790 mRNA_5422 0.10 1.4
64,929 - 13790 mRNA_5422 0.15 -0.1
64,930 + 13790 mRNA_5422 0.15 0.1
64,961 - 13790 mRNA_5422 0.19 0.8
64,961 - 13790 mRNA_5422 0.19 -1.8
65,030 + 13790 mRNA_5422 0.29 -1.8
65,070 - 13790 mRNA_5422 0.34 -0.4
65,076 + 13790 mRNA_5422 0.35 0.6
65,089 - 13790 mRNA_5422 0.37 -2.3
65,102 + 13790 mRNA_5422 0.39 0.7
65,200 - 13790 mRNA_5422 0.52 1.2
65,252 + 13790 mRNA_5422 0.59 -1.6
65,373 - 13790 mRNA_5422 0.76 1.8
65,474 - -0.5
65,494 - -0.1
65,498 - 2.4
65,501 + 1.4
65,657 + -1.4
65,706 - -0.6
65,766 - 0.1
65,774 - 1.1
65,774 - -0.1
65,785 - 2.3
65,808 - -0.0
65,821 - -0.5
65,821 + -0.0
65,825 - -0.2
65,930 + 2.1
65,940 + -0.1
65,976 - 13791 mRNA_5423 0.11 1.7
66,071 + 13791 mRNA_5423 0.15 0.9
66,082 + 13791 mRNA_5423 0.16 0.4
66,102 - 13791 mRNA_5423 0.17 -0.0
66,107 + 13791 mRNA_5423 0.17 1.3
66,130 - 13791 mRNA_5423 0.18 0.6
66,131 + 13791 mRNA_5423 0.18 -2.0
66,174 - 13791 mRNA_5423 0.20 1.2
66,183 + 13791 mRNA_5423 0.20 -0.4
66,186 - 13791 mRNA_5423 0.20 -0.4
66,256 - 13791 mRNA_5423 0.23 -1.7
66,480 + 13791 mRNA_5423 0.33 -1.2
66,480 + 13791 mRNA_5423 0.33 -2.0