Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5419

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5418: 13786 - K01502 E3.5.5.7 aliphatic nitrilase, at 56919 to 58432 13786 mRNA_5419: 13787 - Interpro Cut8, nuclear proteasome tether protein, at 58738 to 60106 13787 mRNA_5420: 13788 - Hypothetical Protein, at 60457 to 62427 13788

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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57,776 + 13786 mRNA_5418 0.57 1.0
57,778 - 13786 mRNA_5418 0.57 1.3
57,948 - 13786 mRNA_5418 0.68 0.0
58,060 - 13786 mRNA_5418 0.75 1.1
58,079 - 13786 mRNA_5418 0.77 0.3
58,138 - 13786 mRNA_5418 0.81 -0.4
58,166 - 13786 mRNA_5418 0.82 1.1
58,212 - 13786 mRNA_5418 0.85 -0.9
58,214 + 13786 mRNA_5418 0.86 1.0
58,395 + -0.4
58,519 - 1.5
58,682 + 2.1
58,816 + -0.1
59,111 + 13787 mRNA_5419 0.27 0.8
59,124 + 13787 mRNA_5419 0.28 0.5
59,195 - 13787 mRNA_5419 0.33 -0.3
59,258 - 13787 mRNA_5419 0.38 1.2
59,418 + 13787 mRNA_5419 0.50 0.5
59,424 + 13787 mRNA_5419 0.50 0.9
59,456 + 13787 mRNA_5419 0.52 -0.5
59,511 + 13787 mRNA_5419 0.56 3.1
59,516 - 13787 mRNA_5419 0.57 0.5
59,547 - 13787 mRNA_5419 0.59 1.7
59,547 - 13787 mRNA_5419 0.59 -0.2
59,554 + 13787 mRNA_5419 0.60 1.6
59,664 - 13787 mRNA_5419 0.68 1.2
59,749 - 13787 mRNA_5419 0.74 -1.3
59,831 + 13787 mRNA_5419 0.80 -1.2
59,849 - 13787 mRNA_5419 0.81 0.9
59,870 - 13787 mRNA_5419 0.83 0.6
60,011 + 0.1
60,012 + 0.8
60,012 + 1.8
60,019 + 2.9
60,116 - 1.3
60,260 + -0.8
60,289 + -0.6
60,292 - 2.0
60,306 - 0.4
60,320 + 1.0
60,596 + 0.6
60,598 - 0.7
60,688 + 13788 mRNA_5420 0.12 0.1
60,786 - 13788 mRNA_5420 0.17 -0.5
60,788 + 13788 mRNA_5420 0.17 -1.0
60,861 - 13788 mRNA_5420 0.20 1.7
60,882 - 13788 mRNA_5420 0.22 0.2
60,988 - 13788 mRNA_5420 0.27 0.8
61,048 - 13788 mRNA_5420 0.30 0.3
61,086 + 13788 mRNA_5420 0.32 0.9