Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5397

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5396: 13764 - KOG4567 GTPase-activating protein, at 2092 to 5786 13764 mRNA_5397: 13765 - HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448, at 6124 to 7635 13765 mRNA_5398: 13766 - K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic), at 8077 to 11128 13766

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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5,203 - 13764 mRNA_5396 0.84 0.8
5,351 - 13764 mRNA_5396 0.88 -0.6
5,370 - 13764 mRNA_5396 0.89 0.1
5,384 - 13764 mRNA_5396 0.89 -0.9
5,504 + 1.2
5,508 + -1.0
5,520 - 0.7
5,614 + -1.5
5,614 + 0.1
5,635 + 0.5
5,647 + 2.4
5,679 + 0.5
5,793 - -1.5
5,794 + 1.4
5,795 - 0.2
5,797 - -0.4
5,801 + 0.3
5,969 + 0.5
5,970 + -1.7
6,077 - 1.7
6,196 + -1.2
6,223 - -0.6
6,240 - -0.4
6,484 + 13765 mRNA_5397 0.24 -1.1
6,575 - 13765 mRNA_5397 0.30 -0.4
6,621 + 13765 mRNA_5397 0.33 1.4
6,632 - 13765 mRNA_5397 0.34 -1.7
6,685 - 13765 mRNA_5397 0.37 1.0
6,808 + 13765 mRNA_5397 0.45 1.8
6,818 + 13765 mRNA_5397 0.46 -0.4
6,907 + 13765 mRNA_5397 0.52 0.5
6,982 - 13765 mRNA_5397 0.57 -0.5
7,012 + 13765 mRNA_5397 0.59 -1.8
7,150 + 13765 mRNA_5397 0.68 -0.2
7,159 - 13765 mRNA_5397 0.68 -0.9
7,227 - 13765 mRNA_5397 0.73 -1.8
7,269 - 13765 mRNA_5397 0.76 0.3
7,573 + -0.9
7,590 - 0.7
7,604 + -1.4
7,715 - 0.1
7,742 - -0.3
7,748 + 2.7
7,873 + 0.0
7,877 + 0.3
7,959 + 1.1
7,964 - -1.1
7,976 + 1.0
7,978 + -0.0
7,981 - 0.5
7,993 + -0.0
7,998 + -0.5
8,003 - 0.6
8,159 + -0.5
8,169 + -1.5
8,283 + 1.4
8,392 - 13766 mRNA_5398 0.10 -0.0
8,423 - 13766 mRNA_5398 0.11 0.6
8,426 + 13766 mRNA_5398 0.11 0.8
8,429 - 13766 mRNA_5398 0.12 -0.2
8,439 + 13766 mRNA_5398 0.12 -3.4