Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5395

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5394: 13762 - SUPERFAMILY--SSF54897, at 121 to 1074 13762 mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1148 to 1997 13763 mRNA_5396: 13764 - KOG4567 GTPase-activating protein, at 2092 to 5786 13764

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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158 - 1.2
159 - -0.7
160 - -0.6
169 - 0.8
180 - 0.8
189 + -0.8
198 + -1.7
201 - 1.3
208 - 0.6
210 + -1.8
225 + 13762 mRNA_5394 0.11 0.5
225 + 13762 mRNA_5394 0.11 1.4
244 + 13762 mRNA_5394 0.13 -0.0
245 - 13762 mRNA_5394 0.13 -1.7
271 - 13762 mRNA_5394 0.16 0.2
276 - 13762 mRNA_5394 0.16 0.9
277 + 13762 mRNA_5394 0.16 0.4
280 - 13762 mRNA_5394 0.17 -0.0
306 + 13762 mRNA_5394 0.19 0.8
317 - 13762 mRNA_5394 0.21 -1.6
345 + 13762 mRNA_5394 0.23 -0.4
345 - 13762 mRNA_5394 0.23 -0.6
347 + 13762 mRNA_5394 0.24 0.7
359 - 13762 mRNA_5394 0.25 -0.3
387 - 13762 mRNA_5394 0.28 -3.2
399 + 13762 mRNA_5394 0.29 0.9
434 + 13762 mRNA_5394 0.33 1.6
447 - 13762 mRNA_5394 0.34 0.4
485 - 13762 mRNA_5394 0.38 -0.5
543 + 13762 mRNA_5394 0.44 -0.3
649 + 13762 mRNA_5394 0.55 -0.6
667 + 13762 mRNA_5394 0.57 -0.2
667 - 13762 mRNA_5394 0.57 0.1
678 - 13762 mRNA_5394 0.58 -0.4
718 + 13762 mRNA_5394 0.63 0.0
723 + 13762 mRNA_5394 0.63 -0.7
802 + 13762 mRNA_5394 0.71 0.6
806 + 13762 mRNA_5394 0.72 1.7
905 - 13762 mRNA_5394 0.82 0.0
911 + 13762 mRNA_5394 0.83 0.9
965 + 13762 mRNA_5394 0.88 0.4
966 + 13762 mRNA_5394 0.89 1.8
968 + 13762 mRNA_5394 0.89 0.9
1,014 - 1.1
1,084 - -1.0
1,103 - 0.2
1,110 + -0.3
1,245 - 13763 mRNA_5395 0.11 2.0
1,260 - 13763 mRNA_5395 0.13 0.1
1,376 - 13763 mRNA_5395 0.27 1.4
1,438 + 13763 mRNA_5395 0.34 1.2
1,438 + 13763 mRNA_5395 0.34 0.7
1,438 + 13763 mRNA_5395 0.34 -1.4
1,523 + 13763 mRNA_5395 0.44 -0.2
1,528 - 13763 mRNA_5395 0.45 -0.8
1,533 + 13763 mRNA_5395 0.45 0.8
1,538 + 13763 mRNA_5395 0.46 2.7
1,538 - 13763 mRNA_5395 0.46 -0.1
1,556 + 13763 mRNA_5395 0.48 0.5
1,639 + 13763 mRNA_5395 0.58 -0.2
1,854 - 13763 mRNA_5395 0.83 1.2
1,855 - 13763 mRNA_5395 0.83 0.0
1,887 - 13763 mRNA_5395 0.87 -1.4
1,908 - 13763 mRNA_5395 0.89 -0.5
2,000 - 0.2
2,009 + 0.6
2,093 + 0.2
2,125 - -0.2
2,156 - 0.6
2,162 + 1.7
2,397 + 2.1
2,412 + -0.4
2,570 + 13764 mRNA_5396 0.13 -1.4
2,586 + 13764 mRNA_5396 0.13 -1.4
2,594 - 13764 mRNA_5396 0.14 2.2
2,597 + 13764 mRNA_5396 0.14 0.2
2,661 + 13764 mRNA_5396 0.15 -0.2
2,773 + 13764 mRNA_5396 0.18 -1.4
2,847 - 13764 mRNA_5396 0.20 1.9
2,895 - 13764 mRNA_5396 0.22 0.4
2,923 + 13764 mRNA_5396 0.22 0.4