Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5369

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5368: 13736 - K09553 STIP1 stress-induced-phosphoprotein 1, at 555613 to 556991 13736 mRNA_5369: 13737 - K03627 MBF1 putative transcription factor, at 557510 to 559067 13737 mRNA_5370: 13738 - K18443 GBF1 golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1, at 559592 to 565388 13738

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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556,733 - 13736 mRNA_5368 0.81 0.7
556,859 + -1.0
556,864 + -0.5
556,867 + 0.4
556,963 - 0.9
557,004 + 0.9
557,020 + 1.9
557,140 + -0.0
557,141 - -0.2
557,149 + -0.5
557,272 - -0.6
557,274 + 0.1
557,275 - 0.6
557,276 - -1.3
557,276 - 0.7
557,283 + -0.3
557,288 + -0.2
557,291 - -0.4
557,291 + 2.7
557,293 + -3.0
557,303 - 0.6
557,311 + 0.6
558,692 - 13737 mRNA_5369 0.76 0.9
558,850 - 13737 mRNA_5369 0.86 0.0
558,855 - 13737 mRNA_5369 0.86 -0.3
558,917 + 0.4
559,330 - 0.7