Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5360

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5359: 13727 - KOG0254 Predicted transporter (major facilitator superfamily), at 536738 to 538804 13727 mRNA_5360: 13728 - HMMPfam-Xylose isomerase-like TIM barrel-PF01261,SUPERFAMILY--SSF51658, at 539342 to 540520 13728 mRNA_5361: 13729 - K00511 SQLE, ERG1 squalene monooxygenase, at 541060 to 542859 13729

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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538,636 + 0.2
538,785 - -0.1
538,807 - 1.6
538,819 + -0.3
538,824 - -0.4
538,976 - -0.8
538,980 + 1.6
538,989 - -0.4
538,992 + 1.3
538,997 - 0.6
538,997 - 2.1
538,997 - -1.2
539,001 + 0.1
539,007 + 0.5
539,011 + 0.0
539,011 - 1.4
539,027 + 2.3
539,028 - -1.6
539,034 - 0.1
539,037 - -1.2
539,039 - 0.1
539,040 - 0.8
539,042 + 0.5
539,042 - -0.9
539,047 + -1.6
539,047 + -0.7
539,049 + 0.4
539,049 + 0.7
539,061 - 1.0
539,062 + 0.1
539,068 + -0.3
539,075 - 0.2
539,092 - 0.2
539,093 - -0.9
539,212 + -0.6
539,223 - 1.4
539,255 + 1.0
539,268 - 0.9
539,275 - 0.2
539,278 + -2.9
539,282 + 0.2
539,282 + -1.6
539,292 + -0.9
539,309 + 0.7
539,320 - 0.6
539,324 + 0.8
539,378 + 0.8
539,508 + 13728 mRNA_5360 0.14 -1.4
539,712 + 13728 mRNA_5360 0.31 -0.5
539,829 + 13728 mRNA_5360 0.41 0.1
539,858 + 13728 mRNA_5360 0.44 -1.3
539,959 - 13728 mRNA_5360 0.52 -0.4
540,403 + -1.1
540,404 - 0.9
540,670 + -0.5
540,709 - -0.0
540,735 - 0.0
540,843 - 0.9
540,853 - 0.1
540,874 + 0.0
540,875 - 0.2
541,014 + -1.1