Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5342

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5341: 13709 - KOG0692 Pentafunctional AROM protein, at 495239 to 496655 13709 mRNA_5342: 13710 - KOG0692 Pentafunctional AROM protein, at 496893 to 498783 13710 mRNA_5343: 13711 - K01835 pgm phosphoglucomutase, at 499617 to 502031 13711

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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495,997 + 13709 mRNA_5341 0.53 2.1
496,005 - 13709 mRNA_5341 0.54 0.6
496,275 - 13709 mRNA_5341 0.73 -0.3
496,391 + 13709 mRNA_5341 0.81 0.2
496,427 - 13709 mRNA_5341 0.84 -0.5
496,564 + 0.3
496,567 - -0.5
496,572 - 1.6
496,584 + 0.5
496,853 - 0.6
496,874 - 0.6
496,875 - -0.0
496,877 + 0.8
496,884 - 2.0
496,895 + -0.6
496,990 - -0.7
497,019 + -1.4
497,038 + -0.4
497,160 + 13710 mRNA_5342 0.14 1.0
497,195 - 13710 mRNA_5342 0.16 0.5
497,309 - 13710 mRNA_5342 0.22 -0.2
497,456 - 13710 mRNA_5342 0.30 -0.5
497,601 - 13710 mRNA_5342 0.37 -1.1
497,635 - 13710 mRNA_5342 0.39 0.1
497,646 - 13710 mRNA_5342 0.40 0.3
497,789 + 13710 mRNA_5342 0.47 -2.4
497,808 - 13710 mRNA_5342 0.48 -1.4
497,912 + 13710 mRNA_5342 0.54 -1.5
498,264 - 13710 mRNA_5342 0.73 0.2
498,333 - 13710 mRNA_5342 0.76 -0.8
498,349 + 13710 mRNA_5342 0.77 -1.2
498,354 + 13710 mRNA_5342 0.77 -1.2
498,683 + 0.4
498,700 - 2.8
498,926 + 0.5
498,935 - -0.4
498,953 - 0.5
498,980 + 0.0
499,540 + 0.1
499,548 - 0.6
499,556 - -0.1
499,575 - 0.9
499,710 + -1.2
499,721 + 2.5
499,723 + -0.8