Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5338

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5337: 13705 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 484904 to 487998 13705 mRNA_5338: 13706 - K00891 E2.7.1.71, aroK, aroL shikimate kinase, at 488482 to 491424 13706 mRNA_5339: 13707 - KOG4771 Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis, at 491578 to 492823 13707

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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487,523 - 13705 mRNA_5337 0.85 0.1
488,100 - -0.5
488,146 + 0.2
488,373 - 1.3
488,393 + -0.9
488,408 + 1.0
488,410 - 0.6
488,520 - -0.9
488,545 - -1.6
488,803 + 13706 mRNA_5338 0.11 -2.2
488,810 - 13706 mRNA_5338 0.11 0.4
488,810 - 13706 mRNA_5338 0.11 -1.1
488,822 - 13706 mRNA_5338 0.12 -0.7
488,956 - 13706 mRNA_5338 0.16 -2.4
488,991 - 13706 mRNA_5338 0.17 -1.3
488,996 + 13706 mRNA_5338 0.17 -0.3
489,100 + 13706 mRNA_5338 0.21 -0.5
489,545 - 13706 mRNA_5338 0.36 0.3
489,925 - 13706 mRNA_5338 0.49 2.2
489,968 - 13706 mRNA_5338 0.50 1.7
490,131 + 13706 mRNA_5338 0.56 -0.1
490,241 + 13706 mRNA_5338 0.60 -1.3
490,297 + 13706 mRNA_5338 0.62 -1.0
490,508 + 13706 mRNA_5338 0.69 1.0
490,508 - 13706 mRNA_5338 0.69 -0.3
490,524 + 13706 mRNA_5338 0.69 0.7
490,564 - 13706 mRNA_5338 0.71 0.4
490,576 - 13706 mRNA_5338 0.71 -0.4
490,740 - 13706 mRNA_5338 0.77 -0.4
490,925 + 13706 mRNA_5338 0.83 -0.5