Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5325

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5324: 13692 - KOG2852 Possible oxidoreductase, at 457858 to 459287 13692 mRNA_5325: 13693 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF52266, at 459771 to 461459 13693 mRNA_5326: 13694 - K00020 mmsB, HIBADH 3-hydroxyisobutyrate dehydrogenase, at 461748 to 463259 13694

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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459,022 - 13692 mRNA_5324 0.81 1.5
459,238 - 1.5
459,242 - -0.9
459,246 + 0.2
459,519 + 1.0
459,546 + -1.0
459,640 + 0.6
459,661 + 0.8
459,669 - -0.8
459,793 - 0.1
459,842 + 0.2
459,988 - 13693 mRNA_5325 0.13 -0.8
460,136 + 13693 mRNA_5325 0.22 0.1
460,139 - 13693 mRNA_5325 0.22 -1.3
460,139 - 13693 mRNA_5325 0.22 0.8
460,234 - 13693 mRNA_5325 0.27 -0.3
460,332 + 13693 mRNA_5325 0.33 1.2
460,438 + 13693 mRNA_5325 0.39 -1.5
460,530 + 13693 mRNA_5325 0.45 -0.8
460,674 + 13693 mRNA_5325 0.53 -1.0
460,725 + 13693 mRNA_5325 0.56 0.5
461,425 - 0.2
461,809 + -0.4
461,834 - 0.9
461,835 + 0.1
461,961 - 13694 mRNA_5326 0.14 -1.1
462,252 + 13694 mRNA_5326 0.33 -2.6
462,257 - 13694 mRNA_5326 0.34 0.4
462,343 + 13694 mRNA_5326 0.39 -3.3
462,432 - 13694 mRNA_5326 0.45 -2.0