Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5316

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5315: 13683 - K06158 ABCF3 ATP-binding cassette, subfamily F, member 3, at 436318 to 439528 13683 mRNA_5316: 13684 - Hypothetical Protein, at 440018 to 441628 13684 mRNA_5317: 13685 - K17498 SPN1, IWS1 transcription factor SPN1, at 441871 to 444778 13685

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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439,151 - 13683 mRNA_5315 0.88 -0.4
439,159 - 13683 mRNA_5315 0.88 -0.5
439,316 - -2.0
439,323 + 1.8
439,349 + -1.6
439,474 - -0.6
439,580 + -1.9
439,582 - 0.0
439,639 - 0.5
439,652 - -1.4
439,771 - 0.8
439,789 + 1.0
439,789 + 0.1
439,921 - 1.7
439,926 - -1.8
439,929 + -0.4
439,935 + 0.9
439,970 + -0.5
440,178 + -1.3
440,210 + 13684 mRNA_5316 0.12 0.0
440,229 + 13684 mRNA_5316 0.13 -2.7
440,246 + 13684 mRNA_5316 0.14 -2.3
440,260 - 13684 mRNA_5316 0.15 -2.1
440,525 - 13684 mRNA_5316 0.31 0.1
440,536 - 13684 mRNA_5316 0.32 3.1
440,547 + 13684 mRNA_5316 0.33 0.6
440,559 + 13684 mRNA_5316 0.34 0.0
440,655 + 13684 mRNA_5316 0.40 -0.9
440,666 + 13684 mRNA_5316 0.40 0.1
440,719 + 13684 mRNA_5316 0.44 -1.7
441,095 - 13684 mRNA_5316 0.67 -0.2
441,107 + 13684 mRNA_5316 0.68 -0.3
441,203 - 13684 mRNA_5316 0.74 -0.7
441,234 - 13684 mRNA_5316 0.75 1.7
441,321 - 13684 mRNA_5316 0.81 0.7
441,429 + 13684 mRNA_5316 0.88 -1.3
441,548 - -1.3
441,551 + 1.4
441,554 - 0.3
441,750 + 1.3
441,967 + 0.4
442,128 + -1.6
442,146 + 0.3
442,289 - 13685 mRNA_5317 0.14 -1.2
442,296 - 13685 mRNA_5317 0.15 1.0
442,578 - 13685 mRNA_5317 0.24 -1.1
442,618 + 13685 mRNA_5317 0.26 0.4