Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5269

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5268: 13636 - K10389 TUBG tubulin gamma, at 319582 to 321853 13636 mRNA_5269: 13637 - K03320 amt, AMT, MEP ammonium transporter, Amt family, at 322459 to 324944 13637

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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321,861 - -0.8
322,020 + -0.3
322,172 + -0.1
322,177 + 1.2
322,208 - -1.9
322,212 - 2.0
322,213 - 1.9
322,217 - 0.8
322,221 + -1.3
322,221 + -3.0
322,222 + 0.0
322,222 - -0.3
322,222 + -1.1
322,232 + 1.1
322,243 + -0.3
322,254 + 0.9
322,361 - -2.8
322,377 - 0.7
322,407 + -1.4
322,525 - 0.6
322,533 - 0.0
322,656 + 1.1
322,836 + 13637 mRNA_5269 0.15 0.2
322,980 + 13637 mRNA_5269 0.21 0.1
322,992 - 13637 mRNA_5269 0.21 0.2
323,003 - 13637 mRNA_5269 0.22 -2.2
323,010 + 13637 mRNA_5269 0.22 -0.1
323,120 + 13637 mRNA_5269 0.27 1.7
323,417 + 13637 mRNA_5269 0.39 -0.4
323,429 + 13637 mRNA_5269 0.39 -0.8
323,559 + 13637 mRNA_5269 0.44 0.4
323,688 + 13637 mRNA_5269 0.49 -0.1
324,146 - 13637 mRNA_5269 0.68 0.5
324,749 + 0.6
325,073 + -1.3
325,359 + -0.6
325,477 - -0.7
325,479 - -1.4
325,490 - -1.1
325,506 + -2.0
325,543 + -0.3
325,768 + 2.2