Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5243

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5243: 13611 - KOG1601 GATA-4/5/6 transcription factors, at 247199 to 251043 13611 mRNA_5244: 13612 - HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208, at 251965 to 253364 13612

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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246,283 - -0.5
246,293 + -1.2
246,297 + 0.8
246,306 + 0.2
246,447 + -0.4
246,451 + 0.5
246,459 + -1.8
246,477 + -2.1
246,597 - 1.1
246,601 + -0.2
246,608 + 0.4
246,612 - -1.1
246,613 + 0.1
246,613 - 0.3
246,614 + 0.7
246,626 - 0.7
246,630 + -2.5
246,631 - -0.1
246,634 + 0.0
246,636 + -0.9
246,664 + -0.6
246,677 - -1.0
246,719 - -1.7
246,729 + -1.4
246,734 - 1.6
246,736 + -1.0
246,736 + -1.5
246,742 - 0.9
246,750 + -0.9
246,752 + 1.6
246,757 + 0.5
246,878 + 1.7
246,934 + 2.0
246,936 + -0.2
246,957 + 0.3
246,957 - -0.4
246,960 + 0.3
246,961 - 0.5
246,961 + 1.4
246,962 - -0.9
246,963 + -1.7
246,966 + -0.4
246,970 - -0.4
246,971 - 1.0
246,974 - 0.5
246,976 + -0.1
246,984 + 2.3
246,986 - -2.1
246,987 + 0.5
246,988 - 1.1
246,993 + -0.3
246,998 + 0.5
247,082 - 0.2
247,144 + 0.8
247,274 + 2.1
247,287 + -0.4
247,287 + -1.8
247,293 + -0.2
247,426 + 0.7
247,437 - -2.4
247,447 - -1.1
247,574 + -0.9
247,705 + 13611 mRNA_5243 0.13 2.1
248,025 + 13611 mRNA_5243 0.21 1.6
248,229 - 13611 mRNA_5243 0.27 -1.1
248,275 - 13611 mRNA_5243 0.28 0.9
248,450 + 13611 mRNA_5243 0.33 -0.0
248,569 + 13611 mRNA_5243 0.36 0.2
248,876 + 13611 mRNA_5243 0.44 0.8
248,906 + 13611 mRNA_5243 0.44 -0.1
249,144 - 13611 mRNA_5243 0.51 1.3
249,180 + 13611 mRNA_5243 0.52 -0.7
249,324 - 13611 mRNA_5243 0.55 1.4
249,768 + 13611 mRNA_5243 0.67 -0.7
250,029 - 13611 mRNA_5243 0.74 1.5
250,367 + 13611 mRNA_5243 0.82 1.1
250,466 - 13611 mRNA_5243 0.85 0.1
250,902 - 0.1
251,028 - -2.9
251,062 - 0.7
251,190 - 0.7
251,197 - -0.5
251,216 - -1.7
251,218 + 0.6
251,225 - 0.4
251,231 + -0.7
251,233 - 3.1
251,241 + -0.1
251,351 + 0.7
251,354 - -0.3
251,356 - 0.5
251,356 - -0.8
251,365 - 0.3
251,366 + 0.5
251,368 + -0.7
251,369 - 0.3
251,372 + 2.1
251,372 - 0.7
251,373 + 0.5
251,375 - -2.6
251,388 + 0.4
251,392 + -0.7
251,397 - -0.0
251,412 - 0.5
251,414 + 1.8
251,421 - -0.2
251,423 - 1.1
251,425 + -0.4
251,528 + -0.3
251,535 + 1.1
251,537 - -0.7
251,553 + 0.1
251,560 - -0.9
251,561 - -0.6
251,681 + 0.1
251,685 + 0.2
251,702 + -1.0
251,719 + 0.2
251,753 + -2.4
251,755 - 0.1
251,810 - -0.1
251,827 - -1.0
251,835 + 0.7