Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5236

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5235: 13603 - KOG1178 Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes, at 226852 to 231804 13603 mRNA_5236: 13604 - KOG2031 Tyrosyl-DNA phosphodiesterase, at 232008 to 233871 13604 mRNA_5237: 13605 - K02914 RP-L34, MRPL34, rpmH large subunit ribosomal protein L34, at 234183 to 234602 13605

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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231,026 + 13603 mRNA_5235 0.84 -0.3
231,028 - 13603 mRNA_5235 0.84 1.3
231,292 + 13603 mRNA_5235 0.90 0.3
231,329 + -1.3
231,401 + 0.9
231,730 + 0.7
231,736 + -0.5
231,862 + 0.9
231,863 + -0.4
231,869 - 0.7
231,876 - 2.1
231,894 - 0.5
232,012 - -1.4
232,185 - 1.7
232,190 + -1.5
232,200 - 13604 mRNA_5236 0.10 0.6
232,635 - 13604 mRNA_5236 0.34 -0.3
232,646 + 13604 mRNA_5236 0.34 0.8
232,776 - 13604 mRNA_5236 0.41 -0.6
233,079 + 13604 mRNA_5236 0.57 -0.9
233,171 - 13604 mRNA_5236 0.62 0.1
233,220 - 13604 mRNA_5236 0.65 2.2
233,664 + 13604 mRNA_5236 0.89 -0.7
233,693 + -0.1
233,814 - -0.4
233,883 - -1.6
233,942 + 0.2
233,954 + -0.7
234,099 - -1.8
234,100 + -0.6
234,113 - -0.2
234,116 + -1.2
234,781 + -0.2
234,821 - 0.4
234,822 - 1.4