Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5233

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5232: 13600 - SUPERFAMILY--SSF52047, at 218691 to 220745 13600 mRNA_5233: 13601 - HMMPfam-Transmembrane amino acid transporter protein-PF01490, at 221714 to 224141 13601 mRNA_5234: 13602 - KOG0725 Reductases with broad range of substrate specificities, at 224900 to 226337 13602

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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220,761 + -0.0
220,803 + -0.6
220,809 + -1.1
220,811 - 0.7
220,937 - -0.0
220,942 - -0.0
220,948 + -0.8
220,965 - 0.3
220,965 + -1.1
220,991 + 1.7
220,993 - -2.1
221,027 + 0.6
221,043 - -0.5
221,044 + 1.4
221,062 - 1.4
221,062 - -1.7
221,064 - 1.0
221,072 - -0.2
221,075 - -1.0
221,081 - 0.6
221,094 + -0.9
221,100 - 1.7
221,101 + 0.2
221,102 - -0.6
221,103 + 1.6
221,105 + -2.1
221,106 - -0.3
221,107 + 0.9
221,123 + 1.4
221,136 + 0.2
221,145 - 0.6
221,146 + -1.8
221,152 + -1.1
221,171 + -2.6
221,179 + 0.2
221,191 - 0.0
221,203 - -0.0
221,204 - -2.7
221,217 + -2.1
221,217 - -2.1
221,219 - -0.4
221,249 + -0.3
221,253 - -0.9
221,253 - -2.4
221,295 + -0.6
221,310 - 3.1
221,318 + -0.6
221,350 + -0.0
221,362 + 0.2
221,368 - -0.2
221,370 + -0.3
221,380 + -0.1
221,381 + -0.1
221,396 + 1.1
221,398 - 1.1
221,398 + -0.9
221,405 + -0.6
221,405 + -0.9
221,411 - -0.3
221,411 + -2.1
221,411 - -1.3
221,412 - -0.5
221,415 + 2.6
221,419 + 1.4
221,419 + -0.2
221,431 + 1.4
221,460 + 0.8
221,465 - -1.2
221,477 - 1.4
221,501 + -2.6
221,508 - 0.7
221,530 + -0.8
221,535 - 1.8
221,535 + 0.5
221,540 - 0.2
221,540 + -1.4
221,540 + -0.7
221,547 + -1.3
221,548 + -0.6
221,552 - 0.0
221,552 + 0.7
221,555 - 1.8
221,555 - 0.3
221,558 + -1.0
221,683 + 0.8
221,707 + -0.3
221,710 + -0.7
221,747 - 0.0
221,805 - -0.3
221,838 - 0.0
221,843 + -0.3
221,850 - -1.3
221,948 - -0.6
222,601 - 13601 mRNA_5233 0.37 1.4
222,723 - 13601 mRNA_5233 0.42 0.3
222,877 - 13601 mRNA_5233 0.48 -1.3
223,488 + 13601 mRNA_5233 0.73 -0.2
224,559 - 2.7
224,588 - -0.7
224,730 - 0.4
224,754 - 0.7
224,768 - 2.2
224,771 + -0.0
224,812 - -0.5
224,904 + -1.0
225,024 + -0.2
225,038 + -0.3
225,102 + 13602 mRNA_5234 0.14 -0.7