Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5231

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5230: 13598 - K17906 ATG2 autophagy-related protein 2, at 209416 to 215994 13598 mRNA_5231: 13599 - Hypothetical Protein, at 216501 to 218178 13599 mRNA_5232: 13600 - SUPERFAMILY--SSF52047, at 218691 to 220745 13600

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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215,573 + 1.9
215,649 + -0.4
215,652 - -2.2
215,807 + -0.6
215,920 + -1.3
215,947 + 0.4
215,952 - -0.3
215,976 + -1.3
216,104 - -0.1
216,216 - 0.3
216,296 + 0.6
216,375 - -0.9
216,378 + -1.6
216,423 + 0.4
216,429 - -0.6
216,579 + 0.1
216,673 + 13599 mRNA_5231 0.10 -0.0
216,705 - 13599 mRNA_5231 0.12 -0.8
216,812 + 13599 mRNA_5231 0.19 -0.1
217,099 - 13599 mRNA_5231 0.36 0.8
217,264 - 13599 mRNA_5231 0.45 0.0
217,278 - 13599 mRNA_5231 0.46 -1.0
217,425 - 13599 mRNA_5231 0.55 0.4
217,716 - 13599 mRNA_5231 0.72 -0.6
217,723 - 13599 mRNA_5231 0.73 0.4
217,739 + 13599 mRNA_5231 0.74 -0.1
217,845 - 13599 mRNA_5231 0.80 0.3
217,861 - 13599 mRNA_5231 0.81 -0.1
217,877 + 13599 mRNA_5231 0.82 0.3
217,896 - 13599 mRNA_5231 0.83 -0.0
218,022 - -0.4
218,024 + -0.3
218,030 - -0.1
218,030 - 0.3
218,031 - 0.0
218,045 - -0.9
218,046 + -1.8
218,054 - -0.9
218,054 - -0.5
218,055 + 0.0
218,055 + -0.5
218,059 + 1.7
218,062 - 0.8
218,063 - -0.2
218,064 + 0.7
218,066 - -0.3
218,068 + -1.2
218,072 - 0.2
218,074 + 0.2
218,074 - -0.6
218,080 + -0.1
218,093 + -1.2
218,096 + 0.4
218,099 - 1.0
218,105 - -0.8
218,120 + 0.0
218,128 - -0.2
218,133 - -0.0
218,142 - 1.7
218,147 + -1.0
218,158 - 1.1
218,160 + -0.5
218,160 + -0.5
218,162 + 0.7
218,164 + -0.7
218,165 + -2.6
218,165 - -0.3
218,166 + -0.6
218,218 - -0.2
218,220 - -0.3
218,245 + 0.3
218,247 + -1.5
218,263 + -0.7
218,294 + 0.3
218,295 - 0.7
218,324 - 1.4
218,328 - -0.7
218,334 - 0.2
218,334 + 1.2
218,337 - -0.8
218,338 - -0.8
218,339 + 0.6
218,341 + -0.3
218,411 + -1.3
218,411 + 1.6
218,505 - 0.5
218,510 - -0.9
218,641 + 0.2
218,658 - 1.9
218,659 - -1.0
218,659 + -0.7
218,933 + 13600 mRNA_5232 0.12 -1.1
218,936 + 13600 mRNA_5232 0.12 1.6
218,937 - 13600 mRNA_5232 0.12 -0.6
219,076 + 13600 mRNA_5232 0.19 -1.8
219,080 - 13600 mRNA_5232 0.19 1.0