Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5212

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5211: 13579 - BLAST related to UPF0768 protein YBL029C-A [Zygosaccharomyc..., at 158362 to 159031 13579 mRNA_5212: 13580 - K00624 E2.3.1.7 carnitine O-acetyltransferase, at 159635 to 162568 13580 mRNA_5213: 13581 - Hypothetical Protein, at 163193 to 164200 13581

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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158,736 - 13579 mRNA_5211 0.56 -0.8
158,760 + 13579 mRNA_5211 0.59 0.7
159,192 - -0.7
159,462 + -1.3
160,335 - 13580 mRNA_5212 0.24 2.1
160,426 + 13580 mRNA_5212 0.27 -0.3
160,785 + 13580 mRNA_5212 0.39 -0.1
161,192 + 13580 mRNA_5212 0.53 0.0
161,212 + 13580 mRNA_5212 0.54 -0.8
161,227 + 13580 mRNA_5212 0.54 -2.7
161,359 - 13580 mRNA_5212 0.59 -0.2
161,482 - 13580 mRNA_5212 0.63 -0.4
162,052 + 13580 mRNA_5212 0.82 -0.8
162,534 - 0.3
162,659 + -2.7
162,665 - 1.2
162,667 + 1.4
162,673 - 1.4
162,673 + 0.1
162,673 + -1.0
162,684 - -0.3
162,686 + 0.6
162,688 + 0.5
162,690 - -1.2
162,709 - -1.8
162,712 + -1.1
162,713 - -0.9
162,713 - -0.8
162,713 + 0.1
162,716 + -0.3
162,718 + -2.2
162,720 + 1.8
162,742 - 0.5
162,748 + 0.8
162,761 - -0.6
162,779 - 1.3
162,782 - -2.1
162,792 - 0.2
162,806 - -3.4
162,807 - -0.1
162,822 + -0.1
162,835 - -0.1
162,863 + 0.6
162,879 + 1.4
162,981 + 1.1
163,070 - 2.3
163,385 + 13581 mRNA_5213 0.19 0.9
163,453 - 13581 mRNA_5213 0.26 -0.8