Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5210

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5209: 13577 - K03257 EIF4A translation initiation factor 4A, at 153381 to 155810 13577 mRNA_5210: 13578 - KOG3221 Glycolipid transfer protein, at 156736 to 157976 13578 mRNA_5211: 13579 - BLAST related to UPF0768 protein YBL029C-A [Zygosaccharomyc..., at 158362 to 159031 13579

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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155,951 + -1.0
156,241 - 1.8
156,242 - 1.8
156,374 - 0.0
156,390 + 0.1
156,400 - -0.6
156,638 - -0.4
156,659 - 1.8
156,674 + -0.7
156,682 + -1.1
156,684 - -0.2
156,684 + -1.7
156,689 + 2.4
156,692 - -0.7
156,800 - 1.3
156,823 - -2.2
156,851 - -0.6
156,856 + 0.6
156,858 - 2.4
156,868 + 13578 mRNA_5210 0.11 0.7
156,991 - 13578 mRNA_5210 0.21 -1.3
156,992 - 13578 mRNA_5210 0.21 -2.3
157,014 - 13578 mRNA_5210 0.22 -0.2
157,279 - 13578 mRNA_5210 0.44 -1.2
158,164 + -0.4
158,168 + 0.2
158,282 + 0.2
158,300 + -3.3
158,329 + -0.1
158,446 + 13579 mRNA_5211 0.13 0.8
158,622 - 13579 mRNA_5211 0.39 -0.5
158,736 - 13579 mRNA_5211 0.56 -0.8
158,760 + 13579 mRNA_5211 0.59 0.7