Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5203

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5202: 13570 - K02874 RP-L14, MRPL14, rplN large subunit ribosomal protein L14, at 140296 to 141028 13570 mRNA_5203: 13571 - K06709 KDM4, JMJD2, JHDM3 jumonji domain-containing protein 2, at 141412 to 145870 13571 mRNA_5204: 13572 - Hypothetical Protein, at 146272 to 147091 13572

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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141,105 - 0.2
141,231 + -0.3
141,239 - -1.4
141,239 + 0.5
141,240 + 0.0
141,277 - 0.7
141,502 - -0.0
141,505 - 0.0
141,826 + -2.0
141,836 - 0.2
141,847 + -0.1
142,116 + 13571 mRNA_5203 0.16 -0.7
142,318 + 13571 mRNA_5203 0.20 0.8
142,405 + 13571 mRNA_5203 0.22 0.4
142,561 - 13571 mRNA_5203 0.26 0.8
142,604 - 13571 mRNA_5203 0.27 2.0
143,255 + 13571 mRNA_5203 0.41 0.0
143,263 + 13571 mRNA_5203 0.42 -0.6
143,309 - 13571 mRNA_5203 0.43 1.5
143,421 + 13571 mRNA_5203 0.45 2.0
143,457 + 13571 mRNA_5203 0.46 -0.4
143,504 + 13571 mRNA_5203 0.47 -0.3
143,529 + 13571 mRNA_5203 0.47 -2.0
143,538 - 13571 mRNA_5203 0.48 1.7
143,723 + 13571 mRNA_5203 0.52 -1.0
143,914 + 13571 mRNA_5203 0.56 0.4
143,983 - 13571 mRNA_5203 0.58 1.4
144,130 + 13571 mRNA_5203 0.61 -1.0
144,153 + 13571 mRNA_5203 0.61 0.9
144,424 + 13571 mRNA_5203 0.68 -0.6
144,584 + 13571 mRNA_5203 0.71 0.3
145,028 + 13571 mRNA_5203 0.81 -0.0
145,050 + 13571 mRNA_5203 0.82 0.4
145,184 - 13571 mRNA_5203 0.85 -0.3
145,322 - 13571 mRNA_5203 0.88 0.0
145,382 - 13571 mRNA_5203 0.89 2.3
145,437 + 0.4
145,438 - 1.2
145,444 - -0.3
145,468 - -0.5
145,477 + -1.3
145,499 - -1.1
145,499 - 0.2
145,506 + -0.1
145,520 + 0.0
145,597 + 0.7
145,602 - -1.6
145,627 + 0.8
145,637 + -0.9
145,728 - 1.5
145,739 - -2.5
145,744 - -0.1
145,753 + -0.3
145,765 - 1.0
145,779 + 0.6
145,924 - 0.9
145,924 + 1.1
145,926 - -0.8
145,935 + -0.0
145,938 - 0.3
146,057 + -0.5
146,060 - -0.2
146,075 - 0.7
146,106 + -0.6
146,273 - -0.7
146,850 - 13572 mRNA_5204 0.70 -0.3