Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5196

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5195: 13563 - KOG0814 Glyoxylase, at 125333 to 126456 13563 mRNA_5196: 13564 - K17218 sqr sulfide-quinone oxidoreductase, at 126891 to 128997 13564 mRNA_5197: 13565 - Hypothetical Protein, at 129115 to 130730 13565

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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125,957 - 13563 mRNA_5195 0.56 2.1
126,343 + 13563 mRNA_5195 0.90 -1.2
126,364 + -0.2
126,411 - -2.5
126,498 - -0.2
126,511 + 0.8
126,518 - -1.3
126,524 - 1.0
126,532 + -1.7
126,540 + 0.1
126,540 + 0.2
126,668 + -0.5
126,684 - 0.2
126,695 + 2.4
126,697 + -2.9
126,704 + 0.6
126,711 - 0.9
126,810 - -0.6
126,816 - -0.9
126,817 + -0.3
126,839 + -0.1
126,924 + 0.6
127,006 + -1.3
127,171 + 13564 mRNA_5196 0.13 0.7
127,303 + 13564 mRNA_5196 0.20 0.5
127,305 - 13564 mRNA_5196 0.20 0.0
127,430 + 13564 mRNA_5196 0.26 2.6
127,443 + 13564 mRNA_5196 0.26 0.6
127,443 - 13564 mRNA_5196 0.26 0.6
127,464 + 13564 mRNA_5196 0.27 -1.0
127,469 + 13564 mRNA_5196 0.27 -1.5
127,477 - 13564 mRNA_5196 0.28 0.7
127,535 + 13564 mRNA_5196 0.31 0.8
127,593 - 13564 mRNA_5196 0.33 0.2
127,603 + 13564 mRNA_5196 0.34 0.2
127,720 - 13564 mRNA_5196 0.39 -0.3
127,757 - 13564 mRNA_5196 0.41 -1.1
127,772 + 13564 mRNA_5196 0.42 0.5
127,781 + 13564 mRNA_5196 0.42 0.7
127,838 - 13564 mRNA_5196 0.45 0.1
127,852 - 13564 mRNA_5196 0.46 1.2
127,859 + 13564 mRNA_5196 0.46 -0.3
127,892 + 13564 mRNA_5196 0.48 0.9
127,892 + 13564 mRNA_5196 0.48 -1.1
127,901 - 13564 mRNA_5196 0.48 -1.7
127,924 + 13564 mRNA_5196 0.49 0.5
127,928 + 13564 mRNA_5196 0.49 0.5
127,930 - 13564 mRNA_5196 0.49 -0.9
127,971 - 13564 mRNA_5196 0.51 0.5
127,988 - 13564 mRNA_5196 0.52 0.4
127,989 + 13564 mRNA_5196 0.52 -0.8
128,002 + 13564 mRNA_5196 0.53 0.6
128,018 + 13564 mRNA_5196 0.53 -1.9
128,044 + 13564 mRNA_5196 0.55 0.2
128,112 + 13564 mRNA_5196 0.58 0.7
128,126 - 13564 mRNA_5196 0.59 0.5
128,134 + 13564 mRNA_5196 0.59 -0.6
128,233 - 13564 mRNA_5196 0.64 0.5
128,280 - 13564 mRNA_5196 0.66 2.5
128,286 - 13564 mRNA_5196 0.66 -0.7
128,289 + 13564 mRNA_5196 0.66 0.6
128,292 + 13564 mRNA_5196 0.66 0.7
128,292 - 13564 mRNA_5196 0.66 -1.7
128,293 + 13564 mRNA_5196 0.67 -0.5
128,321 - 13564 mRNA_5196 0.68 0.7
128,327 - 13564 mRNA_5196 0.68 -0.5
128,468 + 13564 mRNA_5196 0.75 -0.7
128,497 - 13564 mRNA_5196 0.76 -0.2
128,593 + 13564 mRNA_5196 0.81 1.9
128,766 - 13564 mRNA_5196 0.89 1.8
128,861 - -0.9
128,919 + 0.8
129,038 - 0.2
129,055 + 0.1
129,145 - 1.0
129,167 - -0.2
129,189 - 0.5
129,234 - 2.5
129,300 - 13565 mRNA_5197 0.11 -0.3
129,366 - 13565 mRNA_5197 0.16 2.0
129,391 - 13565 mRNA_5197 0.17 0.7
129,648 - 13565 mRNA_5197 0.33 1.5
129,660 + 13565 mRNA_5197 0.34 -0.0
129,797 - 13565 mRNA_5197 0.42 -0.8
129,812 + 13565 mRNA_5197 0.43 1.4
129,813 - 13565 mRNA_5197 0.43 0.8
129,900 + 13565 mRNA_5197 0.49 0.2
129,966 + 13565 mRNA_5197 0.53 1.1