Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5193

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5192: 13560 - KOG2814 Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family), at 117744 to 118664 13560 mRNA_5193: 13561 - KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily), at 119123 to 121882 13561 mRNA_5194: 13562 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 122774 to 124635 13562

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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118,165 + 13560 mRNA_5192 0.46 1.8
118,169 + 13560 mRNA_5192 0.46 -0.6
118,730 + 0.2
118,734 - -0.7
120,480 - 13561 mRNA_5193 0.49 -0.9
120,621 + 13561 mRNA_5193 0.54 -1.0
120,630 - 13561 mRNA_5193 0.55 -0.8
120,654 + 13561 mRNA_5193 0.55 1.7
121,090 - 13561 mRNA_5193 0.71 0.0
121,230 - 13561 mRNA_5193 0.76 -0.7
121,564 - 13561 mRNA_5193 0.88 1.3
121,667 + -2.2
121,975 - 0.7
121,978 + 0.9
121,994 - 1.1
122,124 - -0.9
122,163 + 0.0
122,163 + 0.0
122,179 + -0.3
122,191 + 3.1
122,192 + -0.4
122,269 - -2.2
122,274 - 1.3
122,274 - -0.0
122,280 - 1.5
122,280 + -1.9
122,404 - 0.6
122,445 - 0.9
122,468 + 0.8
122,469 - 0.2
122,473 + 0.3
122,474 + -0.8
122,518 - -0.3
122,519 + -1.4
122,546 - -1.2
122,566 - -1.1
122,570 + 0.4
122,572 + 0.1
122,592 - -0.6
122,595 + -0.4
122,601 + -0.7
122,608 - -0.7
122,625 + 0.9
122,757 + 0.5