Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5179

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5178: 13546 - BLAST chromatin remodeling factor subunit [Kalmanozyma ..., at 83184 to 83780 13546 mRNA_5179: 13547 - Hypothetical Protein, at 84295 to 87162 13547 mRNA_5180: 13548 - Hypothetical Protein, at 87692 to 90433 13548

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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83,476 - 13546 mRNA_5178 0.49 1.4
83,486 + 13546 mRNA_5178 0.51 -1.5
83,633 + 13546 mRNA_5178 0.75 -0.5
83,655 - 13546 mRNA_5178 0.79 -0.3
83,813 + -1.2
84,092 + 1.8
84,092 - -2.1
84,330 + -0.9
84,347 - 2.4
84,390 - 0.1
84,700 - 13547 mRNA_5179 0.14 -2.4
84,935 - 13547 mRNA_5179 0.22 -1.1
85,087 - 13547 mRNA_5179 0.28 -1.0
85,222 - 13547 mRNA_5179 0.32 -1.1
85,244 + 13547 mRNA_5179 0.33 3.7
85,270 + 13547 mRNA_5179 0.34 -0.2
85,352 + 13547 mRNA_5179 0.37 -0.3
85,490 + 13547 mRNA_5179 0.42 0.3
85,528 - 13547 mRNA_5179 0.43 1.4
85,640 + 13547 mRNA_5179 0.47 -1.1
85,700 - 13547 mRNA_5179 0.49 1.6
86,152 + 13547 mRNA_5179 0.65 1.3
86,257 - 13547 mRNA_5179 0.68 1.4
86,289 - 13547 mRNA_5179 0.70 -0.1
86,519 - 13547 mRNA_5179 0.78 -0.9
86,817 + 13547 mRNA_5179 0.88 -1.1
86,819 - 13547 mRNA_5179 0.88 -0.2
86,831 + 13547 mRNA_5179 0.88 0.5
87,142 + -1.1
87,270 - -0.7
87,272 + 0.2
87,284 - -0.6
87,303 + -1.5
87,429 - 1.2
87,433 - -0.2
87,437 - -0.5
87,437 - -0.7
87,439 - -0.5
87,582 + 1.3
87,587 - -0.6
87,587 - 0.1
87,590 - 1.1
87,613 - -0.4
87,742 + -0.6
87,773 - 3.3
87,908 + 0.3
88,013 - 13548 mRNA_5180 0.12 -0.2
88,036 + 13548 mRNA_5180 0.13 -0.8
88,150 - 13548 mRNA_5180 0.17 -1.1