Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5175

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5174: 13542 - Hypothetical Protein, at 77954 to 78191 13542 mRNA_5175: 13543 - K08341 GABARAP, ATG8, LC3 GABA(A) receptor-associated protein, at 78484 to 79264 13543 mRNA_5176: 13544 - Hypothetical Protein, at 80167 to 80892 13544

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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77,683 - 1.5
77,836 + 1.2
77,995 - 13542 mRNA_5174 0.17 0.1
78,115 + 13542 mRNA_5174 0.68 -0.0
78,260 + 0.7
78,273 + 1.9
78,307 - -2.9
78,385 - 2.6
78,395 + -0.1
78,403 - -1.8
78,408 - -0.3
78,421 + -0.1
78,586 + 13543 mRNA_5175 0.13 -1.4
78,720 - 13543 mRNA_5175 0.30 -1.2
78,738 + 13543 mRNA_5175 0.33 0.9
78,878 + 13543 mRNA_5175 0.50 -0.4
79,166 - 13543 mRNA_5175 0.87 -2.2
79,200 - -1.0
79,314 - 1.1
79,426 - 0.6
79,587 - 0.4
79,703 + -0.2
79,758 + -0.3
79,882 - -1.3
79,999 + -0.7
80,229 + -0.4