Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5156

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5155: 13523 - BLAST unknown [Tremella fuciformis], at 30718 to 32151 13523 mRNA_5156: 13524 - K00108 betA, CHDH choline dehydrogenase, at 32964 to 35897 13524 mRNA_5157: 13525 - K11976 RNF216 TRIAD3 E3 ubiquitin-protein ligase RNF216, at 36318 to 38711 13525

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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32,279 - 0.8
32,281 - 0.2
32,367 + -0.9
32,367 + -2.0
32,371 + -0.6
32,375 + -0.4
32,377 - 0.6
32,387 - 1.7
32,387 - 1.2
32,387 - 2.1
32,387 - -0.2
32,395 + 3.2
32,395 + 0.2
32,395 + -1.9
32,395 + -0.7
32,395 + 1.1
32,503 - 1.7
32,554 + 2.7
32,562 + 0.5
32,708 + 3.2
32,710 + 0.1
32,783 + 0.2
32,809 + 1.5
32,835 + -0.0
32,859 + 0.0
32,893 - -1.5
32,898 - -0.5
33,147 - 0.6
33,182 - 0.7
33,268 - 13524 mRNA_5156 0.10 -0.1
33,285 - 13524 mRNA_5156 0.11 0.5
33,452 - 13524 mRNA_5156 0.17 2.2
33,461 - 13524 mRNA_5156 0.17 1.0
33,463 - 13524 mRNA_5156 0.17 -1.1
33,482 + 13524 mRNA_5156 0.18 0.0
33,508 + 13524 mRNA_5156 0.19 -1.0
33,613 + 13524 mRNA_5156 0.22 0.2
33,869 + 13524 mRNA_5156 0.31 0.1
33,885 + 13524 mRNA_5156 0.31 -0.4
34,645 - 13524 mRNA_5156 0.57 0.1
34,665 - 13524 mRNA_5156 0.58 -1.0
34,809 - 13524 mRNA_5156 0.63 0.4
34,960 - 13524 mRNA_5156 0.68 0.3
34,961 - 13524 mRNA_5156 0.68 -1.5
34,998 + 13524 mRNA_5156 0.69 2.4
35,406 - 13524 mRNA_5156 0.83 1.5
35,499 - 13524 mRNA_5156 0.86 -0.3
35,517 + 13524 mRNA_5156 0.87 1.2
35,667 - 1.1
35,828 - 1.4
35,836 + -1.1
35,981 - -2.7
36,100 + 0.0
36,103 - -1.6
36,108 + 0.8
36,154 - -1.2
36,161 + 3.4
36,296 + 0.5
36,535 - 1.8
36,535 - -0.1
36,579 - 13525 mRNA_5157 0.11 0.3
36,585 + 13525 mRNA_5157 0.11 0.2
36,662 + 13525 mRNA_5157 0.14 -0.2
36,693 + 13525 mRNA_5157 0.16 0.0
36,834 + 13525 mRNA_5157 0.22 -0.9
36,847 + 13525 mRNA_5157 0.22 0.5