Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5153

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5152: 13520 - HMMPfam-Domain of unknown function (DUF4336)-PF14234,SUPERFAMILY--SSF56281, at 24796 to 26164 13520 mRNA_5153: 13521 - HMMPfam-Secretory lipase-PF03583,PIRSF--PIRSF029171,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF53474, at 26390 to 28027 13521 mRNA_5154: 13522 - HMMPfam-Beta-lactamase superfamily domain-PF12706,SUPERFAMILY--SSF56281, at 28775 to 30256 13522

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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25,507 + 13520 mRNA_5152 0.52 -0.5
25,738 + 13520 mRNA_5152 0.69 -2.0
25,768 - 13520 mRNA_5152 0.71 0.3
25,772 - 13520 mRNA_5152 0.71 0.4
25,811 + 13520 mRNA_5152 0.74 -0.4
25,917 + 13520 mRNA_5152 0.82 1.1
25,923 - 13520 mRNA_5152 0.82 0.3
25,952 + 13520 mRNA_5152 0.84 0.5
25,974 - 13520 mRNA_5152 0.86 0.0
26,033 + 0.7
26,065 - 0.8
26,078 + 0.2
26,083 + 0.7
26,083 + -2.4
26,217 + 0.7
26,245 - 0.3
26,534 + 2.5
26,614 + 13521 mRNA_5153 0.14 0.3
26,778 - 13521 mRNA_5153 0.24 0.2
26,792 - 13521 mRNA_5153 0.25 0.9
26,932 + 13521 mRNA_5153 0.33 -0.7
27,057 - 13521 mRNA_5153 0.41 1.0
27,091 - 13521 mRNA_5153 0.43 1.3
27,502 - 13521 mRNA_5153 0.68 0.7
27,748 + 13521 mRNA_5153 0.83 1.6
28,099 + -1.8
28,145 - 3.0
28,145 - -0.1
28,215 - -1.1
28,234 + 0.4
28,261 + 0.5
28,285 - 0.5
28,343 - 1.0
28,366 + -0.6
28,372 - -1.2
28,395 - 1.1
28,414 - 1.1
28,414 + -0.3
28,416 + 2.2
28,427 + -1.2
28,551 + 0.0
28,693 - 0.1
28,730 + -0.3
28,850 - -0.9
28,856 + -0.8
29,009 + 13522 mRNA_5154 0.16 0.1