Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5152

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5151: 13519 - HMMPfam-SUR7/PalI family-PF06687, at 22943 to 24220 13519 mRNA_5152: 13520 - HMMPfam-Domain of unknown function (DUF4336)-PF14234,SUPERFAMILY--SSF56281, at 24796 to 26164 13520 mRNA_5153: 13521 - HMMPfam-Secretory lipase-PF03583,PIRSF--PIRSF029171,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF53474, at 26390 to 28027 13521

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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24,019 - 13519 mRNA_5151 0.84 -0.4
24,139 + 0.7
24,144 - 1.6
24,149 - 1.3
24,153 + -0.9
24,153 - 0.3
24,155 - -0.6
24,160 - 1.0
24,162 + 0.1
24,164 + 1.4
24,166 + 1.1
24,177 + 2.4
24,184 + 1.2
24,292 - 0.4
24,301 + -0.8
24,307 + 0.4
24,346 + 0.4
24,362 - -0.2
24,369 - -0.3
24,450 - 0.7
24,463 + -0.2
24,465 + -0.7
24,476 + -0.1
24,488 + -0.4
24,518 + -1.4
24,519 - 0.2
24,521 - -1.3
24,528 + -0.6
24,572 - 0.0
24,649 + -0.1
24,743 + 2.6
24,910 + 0.4
24,913 + -2.2
25,051 + 13520 mRNA_5152 0.19 0.9
25,217 + 13520 mRNA_5152 0.31 -0.1
25,507 + 13520 mRNA_5152 0.52 -0.5
25,738 + 13520 mRNA_5152 0.69 -2.0
25,768 - 13520 mRNA_5152 0.71 0.3
25,772 - 13520 mRNA_5152 0.71 0.4
25,811 + 13520 mRNA_5152 0.74 -0.4
25,917 + 13520 mRNA_5152 0.82 1.1
25,923 - 13520 mRNA_5152 0.82 0.3
25,952 + 13520 mRNA_5152 0.84 0.5
25,974 - 13520 mRNA_5152 0.86 0.0
26,033 + 0.7
26,065 - 0.8
26,078 + 0.2
26,083 + 0.7
26,083 + -2.4
26,217 + 0.7
26,245 - 0.3
26,534 + 2.5
26,614 + 13521 mRNA_5153 0.14 0.3
26,778 - 13521 mRNA_5153 0.24 0.2
26,792 - 13521 mRNA_5153 0.25 0.9
26,932 + 13521 mRNA_5153 0.33 -0.7
27,057 - 13521 mRNA_5153 0.41 1.0
27,091 - 13521 mRNA_5153 0.43 1.3