Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5148

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5148: 13516 - K17918 SNX3_12 sorting nexin-3/12, at 17697 to 18440 13516 mRNA_5149: 13517 - Hypothetical Protein, at 18880 to 20047 13517

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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16,710 + 0.1
16,716 + 0.2
16,791 + 0.4
16,949 - 1.4
16,966 - -1.8
16,973 + 0.3
16,983 + 0.4
16,985 + 1.0
16,986 + 2.1
16,988 + 0.0
16,989 - 0.1
16,992 + -0.1
16,994 - 0.3
16,997 + 0.4
17,006 + -0.6
17,026 + -0.1
17,117 - -1.5
17,123 - -1.1
17,151 + -0.4
17,284 - 1.5
17,285 + 0.5
17,370 - -0.1
17,425 + -0.5
17,716 - -0.5
17,724 + 1.6
17,862 + 13516 mRNA_5148 0.22 0.3
17,873 + 13516 mRNA_5148 0.24 0.2
17,973 + 13516 mRNA_5148 0.37 0.4
18,229 + 13516 mRNA_5148 0.72 -2.0
18,306 + 13516 mRNA_5148 0.82 -0.4
18,445 + 2.4
18,531 + -1.9
18,594 - -0.2
18,604 + 0.9
18,622 + 1.2
18,726 + 0.0
18,769 + -0.7
18,917 + 1.3
18,926 - 0.7
18,987 - 0.0
19,031 + 13517 mRNA_5149 0.13 -3.3
19,047 - 13517 mRNA_5149 0.14 -0.3
19,051 + 13517 mRNA_5149 0.15 1.2
19,051 + 13517 mRNA_5149 0.15 0.1
19,054 - 13517 mRNA_5149 0.15 0.1
19,060 + 13517 mRNA_5149 0.15 -2.5
19,178 - 13517 mRNA_5149 0.26 -1.8
19,187 - 13517 mRNA_5149 0.26 1.8
19,194 + 13517 mRNA_5149 0.27 -0.6
19,204 + 13517 mRNA_5149 0.28 1.5
19,209 + 13517 mRNA_5149 0.28 0.1
19,351 + 13517 mRNA_5149 0.40 1.5
19,369 - 13517 mRNA_5149 0.42 -1.3