Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5014

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5014: 13382 - K01621 xfp, xpk xylulose-5-phosphate/fructose-6-phosphate phosphoketolase, at 1549250 to 1553078 13382 mRNA_5015: 13383 - K00925 ackA acetate kinase, at 1553559 to 1555008 13383

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,548,271 + 0.3
1,548,279 + 1.6
1,548,297 - -1.2
1,548,299 - 0.2
1,548,302 + -0.6
1,548,305 - -0.1
1,548,311 - -0.2
1,548,311 - -0.0
1,548,342 + 0.5
1,548,346 - -1.6
1,548,355 - 0.0
1,548,361 + 1.4
1,548,362 + 0.2
1,548,363 - -1.3
1,548,365 + 0.9
1,548,369 - -0.5
1,548,375 + 2.1
1,548,380 - 0.6
1,548,385 - 0.3
1,548,385 - 0.5
1,548,397 - 1.1
1,548,398 - 0.5
1,548,403 + -1.0
1,548,404 - 1.4
1,548,411 + -0.3
1,548,412 - -0.5
1,548,416 + -0.2
1,548,421 - 0.9
1,548,423 + 0.5
1,548,426 + 0.4
1,548,435 + 0.1
1,548,461 - -0.5
1,548,488 + -0.1
1,548,503 - -0.3
1,548,544 + 3.6
1,548,571 + 0.3
1,548,594 - -0.2
1,548,609 - -0.4
1,548,613 + 0.8
1,548,616 - 1.2
1,548,627 - 0.3
1,548,631 - 0.5
1,548,633 - -1.2
1,548,643 - 1.1
1,548,651 + 0.5
1,548,654 - 0.7
1,548,655 - 0.8
1,548,655 + -0.4
1,548,662 - -1.2
1,548,665 + 0.4
1,548,676 - -1.0
1,548,716 + -2.7
1,548,724 + 0.0
1,548,725 - 0.2
1,548,757 - -0.9
1,548,757 + 0.4
1,548,760 + -1.8
1,548,761 - -2.5
1,548,806 - -0.1
1,548,825 + 0.4
1,548,829 - 0.2
1,548,858 + 0.7
1,548,904 - 1.8
1,548,947 - 0.3
1,548,951 + -1.9
1,548,959 + 0.7
1,549,046 - -0.6
1,549,092 - 0.7
1,549,101 + 1.6
1,549,102 - -0.0
1,549,127 + -0.6
1,549,151 + -0.6
1,549,152 - -2.0
1,549,187 + -0.1
1,549,217 - -0.0
1,549,282 - -1.0
1,549,342 - -0.4
1,549,372 - -0.2
1,549,382 - 1.0
1,549,415 - 0.6
1,549,503 + -2.4
1,549,519 - 0.9
1,549,589 - -2.2
1,549,591 - 1.4
1,549,684 - 13382 mRNA_5014 0.11 0.2
1,549,697 + 13382 mRNA_5014 0.12 0.2
1,549,941 + 13382 mRNA_5014 0.18 -0.0
1,549,983 + 13382 mRNA_5014 0.19 -0.1
1,550,040 + 13382 mRNA_5014 0.21 0.5
1,550,040 + 13382 mRNA_5014 0.21 -3.6
1,550,062 + 13382 mRNA_5014 0.21 0.0
1,550,096 + 13382 mRNA_5014 0.22 -0.0
1,550,140 + 13382 mRNA_5014 0.23 1.4
1,550,252 - 13382 mRNA_5014 0.26 -1.9
1,550,368 + 13382 mRNA_5014 0.29 0.3
1,550,372 + 13382 mRNA_5014 0.29 -0.2
1,550,528 + 13382 mRNA_5014 0.33 0.6
1,550,708 - 13382 mRNA_5014 0.38 1.3
1,550,801 - 13382 mRNA_5014 0.41 1.2
1,550,841 + 13382 mRNA_5014 0.42 0.6
1,550,930 + 13382 mRNA_5014 0.44 -1.0
1,550,965 + 13382 mRNA_5014 0.45 0.2
1,551,202 - 13382 mRNA_5014 0.51 -0.6
1,551,277 + 13382 mRNA_5014 0.53 -0.1
1,551,289 - 13382 mRNA_5014 0.53 0.8
1,551,417 - 13382 mRNA_5014 0.57 1.3
1,551,493 + 13382 mRNA_5014 0.59 -1.0
1,551,626 + 13382 mRNA_5014 0.62 0.7
1,551,647 - 13382 mRNA_5014 0.63 -0.5
1,551,713 + 13382 mRNA_5014 0.64 2.3
1,551,813 + 13382 mRNA_5014 0.67 0.5
1,552,174 - 13382 mRNA_5014 0.76 0.2
1,552,202 + 13382 mRNA_5014 0.77 0.4
1,552,350 - 13382 mRNA_5014 0.81 -0.2
1,552,416 - 13382 mRNA_5014 0.83 -1.4
1,552,523 + 13382 mRNA_5014 0.85 -0.7
1,552,690 + 13382 mRNA_5014 0.90 1.7
1,552,763 - 0.1
1,552,839 - -0.8
1,552,845 + -0.1
1,552,985 - 1.6
1,553,003 + -0.4
1,553,084 - -0.9
1,553,108 + -0.7
1,553,249 + 1.1
1,553,273 + 0.0
1,553,283 - -1.0
1,553,285 + -0.8
1,553,287 + -1.0
1,553,290 - 2.6
1,553,292 - -2.4
1,553,293 - 3.3
1,553,294 + 0.7
1,553,298 + 0.6
1,553,298 + -2.8
1,553,301 - -0.3
1,553,303 - 0.7
1,553,306 + 0.2
1,553,310 + 0.4
1,553,311 + -0.2
1,553,313 + -0.5
1,553,313 - 1.4
1,553,316 - 1.7
1,553,318 - 0.3
1,553,323 + -0.8
1,553,336 + -0.0
1,553,344 + -2.6
1,553,364 - -0.8
1,553,371 + -0.0
1,553,383 - -0.9
1,553,384 + 0.7
1,553,394 + -0.9
1,553,396 - 1.4
1,553,403 + -1.3
1,553,413 + -0.2
1,553,416 - 0.6
1,553,417 + 1.3
1,553,426 - 0.8
1,553,427 + -0.4
1,553,428 - 0.2
1,553,437 + -0.2
1,553,445 + -0.6
1,553,445 + 0.0
1,553,448 + -2.2
1,553,451 + -1.3
1,553,451 - 1.3
1,553,460 + -2.5
1,553,484 + -1.3
1,553,485 - -0.2
1,553,485 - -0.5
1,553,491 - 2.8
1,553,602 - 1.1
1,553,603 + 1.1
1,553,606 - -1.3
1,553,719 + 13383 mRNA_5015 0.11 -1.5
1,553,758 + 13383 mRNA_5015 0.14 -0.2
1,553,772 + 13383 mRNA_5015 0.15 1.2
1,553,869 + 13383 mRNA_5015 0.21 0.3