Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5012

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5011: 13379 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 1540350 to 1542527 13379 mRNA_5012: 13380 - K01886 QARS, glnS glutaminyl-tRNA synthetase, at 1542746 to 1545688 13380 mRNA_5013: 13381 - BLAST regulatory protein wetA [Paracoccidioides lutzii ..., at 1545921 to 1548060 13381

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,541,813 + 13379 mRNA_5011 0.67 0.1
1,541,816 - 13379 mRNA_5011 0.67 0.1
1,541,972 + 13379 mRNA_5011 0.74 0.1
1,542,422 + 0.3
1,542,429 - -1.4
1,542,552 - -0.7
1,542,590 + -1.3
1,542,704 - -1.6
1,542,719 - 1.0
1,545,370 - 13380 mRNA_5012 0.89 0.1
1,545,682 + -1.5
1,546,444 + 13381 mRNA_5013 0.24 1.8
1,546,547 + 13381 mRNA_5013 0.29 1.4
1,546,547 - 13381 mRNA_5013 0.29 0.8
1,546,567 - 13381 mRNA_5013 0.30 -1.2