Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4952

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4951: 13319 - K15114 ORT1 mitochondrial ornithine carrier protein, at 1386177 to 1387405 13319 mRNA_4952: 13320 - BLAST Tetratricopeptide-like helical [Xanthophyllomyces den..., at 1387683 to 1389449 13320 mRNA_4953: 13321 - HMMPfam-Pyridoxamine 5'-phosphate oxidase-PF01243,SUPERFAMILY--SSF50475, at 1389640 to 1390956 13321

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,387,116 - 13319 mRNA_4951 0.76 0.8
1,387,245 + 13319 mRNA_4951 0.87 -1.2
1,387,315 + -0.6
1,387,533 + 0.7
1,387,685 - -0.0
1,387,713 - 0.6
1,388,590 - 13320 mRNA_4952 0.51 -0.5
1,389,066 + 13320 mRNA_4952 0.78 1.7
1,389,179 - 13320 mRNA_4952 0.85 1.2
1,389,182 - 13320 mRNA_4952 0.85 2.2
1,389,188 + 13320 mRNA_4952 0.85 -0.9
1,389,318 - 0.1
1,389,338 + -1.5
1,389,338 + 0.6
1,389,478 + -1.6
1,389,504 + 1.9
1,389,509 - -0.1
1,389,510 - 0.8
1,389,533 - 1.4
1,389,543 - 0.2
1,389,546 - 0.4
1,389,552 + 1.0
1,389,560 - 1.0
1,389,560 - 0.6
1,389,562 - 1.3
1,389,563 + 0.5
1,389,566 - 0.5
1,389,568 + 2.8
1,389,570 + 0.0
1,389,572 - 0.7
1,389,575 + 1.1
1,389,580 - 0.6
1,389,678 - 0.1
1,389,702 - -1.0
1,389,703 + -1.3
1,389,712 - -1.0
1,389,712 - -0.9
1,389,713 + 0.4
1,389,714 + -0.4
1,389,720 + 1.9
1,389,725 + 0.3
1,389,729 + 0.9
1,389,734 - -0.4
1,389,742 - 1.2
1,389,748 + 3.0
1,389,855 + 13321 mRNA_4953 0.16 0.2
1,389,893 + 13321 mRNA_4953 0.19 0.4
1,390,027 - 13321 mRNA_4953 0.29 -2.0
1,390,029 - 13321 mRNA_4953 0.30 0.1
1,390,043 - 13321 mRNA_4953 0.31 -0.1
1,390,175 + 13321 mRNA_4953 0.41 -0.2
1,390,192 + 13321 mRNA_4953 0.42 -1.3
1,390,305 - 13321 mRNA_4953 0.50 1.1
1,390,419 + 13321 mRNA_4953 0.59 0.5