Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4948

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4947: 13315 - K12584 DCPS, DCS m7GpppX diphosphatase, at 1380148 to 1381498 13315 mRNA_4948: 13316 - Hypothetical Protein, at 1381700 to 1382968 13316 mRNA_4949: 13317 - Hypothetical Protein, at 1383252 to 1384313 13317

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,380,838 - 13315 mRNA_4947 0.51 0.3
1,380,978 + 13315 mRNA_4947 0.61 0.3
1,381,450 - -0.7
1,381,453 + -0.1
1,381,570 - 0.3
1,381,731 - -0.9
1,382,031 + 13316 mRNA_4948 0.26 -0.9
1,382,147 + 13316 mRNA_4948 0.35 -1.7
1,382,180 + 13316 mRNA_4948 0.38 0.0
1,382,409 - 13316 mRNA_4948 0.56 -1.7
1,382,577 - 13316 mRNA_4948 0.69 -0.4
1,382,839 + 13316 mRNA_4948 0.90 0.9
1,382,852 - -1.7
1,382,853 - 0.5
1,382,855 + -2.7
1,382,873 - -1.4
1,382,874 + 2.3
1,382,886 - 0.1
1,383,008 + 1.3
1,383,029 - -0.4
1,383,033 + 0.3
1,383,034 + 0.1
1,383,039 - -0.2
1,383,054 - -0.1
1,383,073 - 0.1
1,383,094 - -0.0
1,383,094 + 0.7
1,383,099 - 0.2
1,383,106 - 1.4
1,383,110 - -1.6
1,383,119 + 1.7
1,383,126 - 1.0
1,383,126 - -0.1
1,383,138 + 0.1
1,383,142 - -1.9
1,383,147 + 0.2
1,383,147 - 0.4
1,383,155 - 0.5
1,383,165 - 0.5
1,383,165 + -0.1
1,383,168 + 0.6
1,383,184 + 0.3
1,383,186 - 1.9
1,383,190 + -1.2
1,383,195 - 0.3
1,383,195 - -0.9
1,383,213 + -0.2
1,383,214 - 0.3
1,383,221 - 0.9
1,383,223 + 1.1
1,383,233 - -2.1
1,383,234 - 0.6
1,383,244 + 0.3
1,383,279 - 0.4
1,383,283 - 0.8
1,383,297 - 0.1
1,383,341 - 1.0
1,383,363 - 13317 mRNA_4949 0.10 1.1
1,383,381 - 13317 mRNA_4949 0.12 -0.7
1,383,514 + 13317 mRNA_4949 0.25 1.9
1,383,647 - 13317 mRNA_4949 0.37 0.3
1,383,722 + 13317 mRNA_4949 0.44 0.1
1,383,799 + 13317 mRNA_4949 0.52 -0.1
1,383,811 + 13317 mRNA_4949 0.53 0.1
1,383,872 + 13317 mRNA_4949 0.58 0.2