Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4941

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4940: 13308 - K06693 PSMD9 26S proteasome non-ATPase regulatory subunit 9, at 1367349 to 1367987 13308 mRNA_4941: 13309 - K12608 CAF16 CCR4-NOT complex subunit CAF16, at 1368414 to 1369977 13309 mRNA_4942: 13310 - Hypothetical Protein, at 1370208 to 1371359 13310

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,367,480 + 13308 mRNA_4940 0.21 -0.1
1,367,585 - 13308 mRNA_4940 0.37 -0.4
1,367,776 + 13308 mRNA_4940 0.67 -0.4
1,367,820 + 13308 mRNA_4940 0.74 0.8
1,368,074 - 0.2
1,368,150 + -0.1
1,368,211 + 0.4
1,368,220 + -0.0
1,368,221 - -0.6
1,368,345 - 2.1
1,368,631 - 13309 mRNA_4941 0.14 -1.1
1,368,647 + 13309 mRNA_4941 0.15 -0.7
1,368,649 - 13309 mRNA_4941 0.15 1.0
1,368,682 + 13309 mRNA_4941 0.17 -1.1
1,368,785 + 13309 mRNA_4941 0.24 0.1
1,368,824 + 13309 mRNA_4941 0.26 0.2
1,368,920 - 13309 mRNA_4941 0.32 -0.4
1,368,929 + 13309 mRNA_4941 0.33 0.1
1,369,197 - 13309 mRNA_4941 0.50 -0.9
1,369,232 + 13309 mRNA_4941 0.52 0.0
1,369,383 + 13309 mRNA_4941 0.62 -0.6
1,369,498 + 13309 mRNA_4941 0.69 1.0
1,369,511 + 13309 mRNA_4941 0.70 -1.5
1,369,628 - 13309 mRNA_4941 0.78 -1.8
1,369,960 - -0.6
1,370,274 + 0.1
1,370,577 + 13310 mRNA_4942 0.32 0.9
1,370,695 - 13310 mRNA_4942 0.42 1.5
1,370,959 - 13310 mRNA_4942 0.65 2.3