Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4924

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4923: 13291 - K03141 TFIIH1, GTF2H1, TFB1 transcription initiation factor TFIIH subunit 1, at 1320698 to 1323090 13291 mRNA_4924: 13292 - KOG3012 Uncharacterized conserved protein, at 1323215 to 1324561 13292 mRNA_4925: 13293 - ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 1324848 to 1328229 13293

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,322,752 - 13291 mRNA_4923 0.86 0.2
1,323,180 + -1.6
1,323,458 - 13292 mRNA_4924 0.18 -3.0
1,323,465 + 13292 mRNA_4924 0.19 -1.7
1,323,590 - 13292 mRNA_4924 0.28 -1.7
1,323,608 + 13292 mRNA_4924 0.29 2.0
1,323,923 - 13292 mRNA_4924 0.53 1.2
1,324,200 - 13292 mRNA_4924 0.73 -0.2
1,324,764 + 0.4
1,324,786 - -0.2
1,324,812 + 1.4
1,325,224 - 13293 mRNA_4925 0.11 1.8
1,325,385 - 13293 mRNA_4925 0.16 -0.7