Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4875

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4874: 13242 - KOG2922 Uncharacterized conserved protein, at 1192452 to 1195364 13242 mRNA_4875: 13243 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 1195483 to 1197426 13243 mRNA_4876: 13244 - K20133 USP6NL USP6 N-terminal-like protein, at 1198224 to 1200676 13244

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,194,700 - 13242 mRNA_4874 0.77 0.3
1,195,141 + 0.6
1,195,308 - 0.4
1,195,325 + 0.1
1,195,326 + 1.2
1,196,199 + 13243 mRNA_4875 0.37 -0.9
1,196,201 + 13243 mRNA_4875 0.37 -0.7
1,196,446 - 13243 mRNA_4875 0.50 -0.6
1,196,492 - 13243 mRNA_4875 0.52 -1.0
1,196,640 - 13243 mRNA_4875 0.60 -0.8
1,197,503 - -0.2
1,197,639 + -0.0
1,197,642 - -0.6
1,197,655 + 0.8
1,197,782 - 1.6
1,197,792 - 2.3
1,197,802 - 0.8
1,197,937 - 2.3
1,197,951 + -0.2
1,197,955 - -0.8
1,197,974 + 2.5