Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4860

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4859: 13227 - Hypothetical Protein, at 1163089 to 1163880 13227 mRNA_4860: 13228 - K13237 DECR2 peroxisomal 2,4-dienoyl-CoA reductase, at 1164128 to 1165413 13228 mRNA_4861: 13229 - BLAST NADH-ubiquinone oxidoreductase [Sanghuangporus baumii], at 1165741 to 1167081 13229

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,163,129 - 0.9
1,163,465 + 13227 mRNA_4859 0.47 -0.6
1,163,465 - 13227 mRNA_4859 0.47 -0.7
1,163,573 - 13227 mRNA_4859 0.61 -1.1
1,163,580 - 13227 mRNA_4859 0.62 -0.2
1,164,050 + -0.1
1,164,052 + 1.2
1,164,078 - 1.4
1,164,097 - 2.2
1,164,241 - -1.7
1,164,242 - -0.2
1,164,376 + 13228 mRNA_4860 0.19 -0.0
1,164,517 - 13228 mRNA_4860 0.30 -0.7
1,164,527 + 13228 mRNA_4860 0.31 -0.5
1,164,649 - 13228 mRNA_4860 0.41 0.2
1,164,663 - 13228 mRNA_4860 0.42 -1.4
1,164,665 - 13228 mRNA_4860 0.42 1.3
1,165,238 + 13228 mRNA_4860 0.86 -2.0
1,165,248 - 13228 mRNA_4860 0.87 0.1
1,165,250 + 13228 mRNA_4860 0.87 1.0
1,165,366 + 0.2
1,165,368 + -0.7
1,165,386 - -0.2
1,165,527 - 0.2
1,165,536 - 0.2
1,165,683 - 0.8
1,165,700 - 0.2
1,165,705 + 1.4
1,165,844 + 3.0
1,165,848 + -1.5
1,165,971 - 13229 mRNA_4861 0.17 -1.4
1,165,997 - 13229 mRNA_4861 0.19 -0.1
1,166,132 + 13229 mRNA_4861 0.29 -1.0