Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4851

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4850: 13218 - K02309 DBF4 regulatory subunit for Cdc7p protein kinase, at 1143914 to 1146258 13218 mRNA_4851: 13219 - K06679 MAD1 mitotic spindle assembly checkpoint protein MAD1, at 1146547 to 1149479 13219 mRNA_4852: 13220 - Hypothetical Protein, at 1149636 to 1152739 13220

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,146,239 - -0.5
1,146,488 - -0.7
1,146,496 - 0.5
1,146,530 + -1.5
1,146,537 - -2.2
1,146,540 + 0.2
1,147,716 - 13219 mRNA_4851 0.40 -0.4
1,147,738 - 13219 mRNA_4851 0.41 -2.6
1,148,144 - 13219 mRNA_4851 0.54 0.1
1,148,743 - 13219 mRNA_4851 0.75 -1.0
1,149,121 - 13219 mRNA_4851 0.88 0.1
1,149,121 - 13219 mRNA_4851 0.88 -0.0
1,149,153 - 13219 mRNA_4851 0.89 0.5
1,149,266 + 1.2
1,149,274 - -0.7
1,149,283 - 0.0
1,149,426 + 1.2
1,149,427 - 2.6
1,149,476 + 1.8
1,149,560 - -0.4
1,149,560 - 0.9
1,149,570 - 2.3
1,149,599 + 0.8
1,149,694 + 0.5
1,149,717 - 0.8
1,149,718 + -1.0
1,149,760 - -1.5
1,150,034 + 13220 mRNA_4852 0.13 -0.0
1,150,158 + 13220 mRNA_4852 0.17 1.0
1,150,164 - 13220 mRNA_4852 0.17 0.8
1,150,326 + 13220 mRNA_4852 0.22 -0.8
1,150,345 - 13220 mRNA_4852 0.23 1.1
1,150,438 - 13220 mRNA_4852 0.26 -0.9
1,150,460 + 13220 mRNA_4852 0.27 0.9
1,150,469 - 13220 mRNA_4852 0.27 -0.8