Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4770

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4769: 13137 - K01866 YARS, tyrS tyrosyl-tRNA synthetase, at 969625 to 971504 13137 mRNA_4770: 13138 - KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference, at 971879 to 977050 13138 mRNA_4771: 13139 - K20062 ART4_5_7 arrestin-related trafficking adapter 4/5/7, at 977972 to 980923 13139

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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971,678 + -0.1
971,843 - 1.4
971,857 + 1.4
971,991 - 0.5
972,007 + 1.0
972,262 - 2.1
972,538 - 13138 mRNA_4770 0.13 -1.4
972,554 - 13138 mRNA_4770 0.13 1.0
972,587 + 13138 mRNA_4770 0.14 0.6
972,706 - 13138 mRNA_4770 0.16 0.1
972,725 - 13138 mRNA_4770 0.16 0.2
972,746 - 13138 mRNA_4770 0.17 -0.2
972,749 + 13138 mRNA_4770 0.17 -1.6
972,977 - 13138 mRNA_4770 0.21 -0.0
973,000 - 13138 mRNA_4770 0.22 1.5
973,147 + 13138 mRNA_4770 0.25 0.3
973,168 - 13138 mRNA_4770 0.25 -0.6
973,500 - 13138 mRNA_4770 0.31 0.5
973,691 - 13138 mRNA_4770 0.35 -2.1
973,805 - 13138 mRNA_4770 0.37 2.4
974,125 + 13138 mRNA_4770 0.43 -1.5
974,395 + 13138 mRNA_4770 0.49 -0.5
975,115 - 13138 mRNA_4770 0.63 0.1
975,124 - 13138 mRNA_4770 0.63 0.3
975,130 + 13138 mRNA_4770 0.63 -0.3
975,275 - 13138 mRNA_4770 0.66 0.9
975,296 - 13138 mRNA_4770 0.66 -0.5
975,390 - 13138 mRNA_4770 0.68 -0.5
975,443 - 13138 mRNA_4770 0.69 -0.7
975,466 - 13138 mRNA_4770 0.69 0.3
975,572 + 13138 mRNA_4770 0.71 -0.1
975,594 + 13138 mRNA_4770 0.72 0.5
975,708 - 13138 mRNA_4770 0.74 -1.6
975,862 - 13138 mRNA_4770 0.77 -0.7
976,044 + 13138 mRNA_4770 0.81 0.4
976,121 + 13138 mRNA_4770 0.82 0.1
976,314 + 13138 mRNA_4770 0.86 0.8
976,449 + 13138 mRNA_4770 0.88 0.6
976,472 - 13138 mRNA_4770 0.89 -0.5
976,476 - 13138 mRNA_4770 0.89 -0.0
976,508 + 13138 mRNA_4770 0.90 -0.3
976,634 - -0.1
976,794 + -1.9
976,795 + 0.1
976,902 + 0.7
976,924 + -0.9
977,100 + -0.3
977,145 - -2.2
977,209 - -0.3
977,220 - -1.7
977,225 - 0.6
977,228 + -1.7
977,271 + -0.6
977,311 + 0.3
977,353 + -0.2
977,360 - -0.0
977,361 - 1.4
977,362 - 1.4
977,365 - 1.1
977,374 - 0.2
977,376 + -0.5
977,393 + 0.5
977,513 - 1.8
977,525 - -0.2
977,531 - -2.3
977,624 - -0.9
977,663 + -2.3