Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4762

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4762: 13130 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 946790 to 947960 13130 mRNA_4763: 13131 - KOG1263 Multicopper oxidases, at 948670 to 952404 13131

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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945,832 - 1.7
945,837 - -0.1
945,842 + -1.6
946,099 - -0.3
946,168 + 0.2
946,173 + -0.8
946,292 - 0.4
946,445 - 0.2
946,516 + -1.5
946,549 - -0.8
946,746 + 0.3
947,222 - 13130 mRNA_4762 0.37 0.3
947,224 - 13130 mRNA_4762 0.37 -1.3
947,679 - 13130 mRNA_4762 0.76 -1.8
947,858 + 1.1
948,115 - -0.6
948,136 - 0.6
948,187 + -0.3
948,188 + 1.1
948,292 - 0.1
948,426 - 1.1
948,458 + -1.4
948,584 + 0.4