Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4752

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4751: 13119 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 921381 to 922742 13119 mRNA_4752: 13120 - KOG1263 Multicopper oxidases, at 922993 to 927297 13120 mRNA_4753: 13121 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 927583 to 931061 13121

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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922,065 - 13119 mRNA_4751 0.50 0.4
922,244 + 13119 mRNA_4751 0.63 -1.7
922,295 - 13119 mRNA_4751 0.67 1.1
922,370 + 13119 mRNA_4751 0.73 -0.2
922,541 + 13119 mRNA_4751 0.85 0.5
922,542 - 13119 mRNA_4751 0.85 0.1
922,551 - 13119 mRNA_4751 0.86 -3.2
922,585 + 13119 mRNA_4751 0.88 -1.1
922,697 + -1.1
923,294 - -0.9
923,310 - -0.6
923,474 + 13120 mRNA_4752 0.11 0.9
923,596 - 13120 mRNA_4752 0.14 -0.4
923,728 + 13120 mRNA_4752 0.17 1.3
923,743 + 13120 mRNA_4752 0.17 -0.9
923,754 + 13120 mRNA_4752 0.18 -0.3
923,890 - 13120 mRNA_4752 0.21 0.0
923,946 + 13120 mRNA_4752 0.22 0.5
924,002 - 13120 mRNA_4752 0.23 -0.5
924,005 - 13120 mRNA_4752 0.24 -0.5
924,009 + 13120 mRNA_4752 0.24 -0.9
924,431 - 13120 mRNA_4752 0.33 -2.2
924,623 + 13120 mRNA_4752 0.38 1.1
924,627 - 13120 mRNA_4752 0.38 0.3
925,597 - 13120 mRNA_4752 0.60 2.5
925,669 + 13120 mRNA_4752 0.62 0.8
926,157 + 13120 mRNA_4752 0.73 -0.3
926,194 + 13120 mRNA_4752 0.74 -1.4
926,311 - 13120 mRNA_4752 0.77 1.5
926,496 - 13120 mRNA_4752 0.81 0.2
926,672 - 13120 mRNA_4752 0.85 0.2
926,822 + 13120 mRNA_4752 0.89 -0.2
926,841 + 13120 mRNA_4752 0.89 0.3
926,930 - 0.3
926,936 - -0.1
927,146 + 0.1
927,225 - -0.6
927,384 - 0.1
927,687 + -0.1
928,093 + 13121 mRNA_4753 0.15 1.2
928,145 - 13121 mRNA_4753 0.16 -0.3
928,208 - 13121 mRNA_4753 0.18 0.4
928,215 + 13121 mRNA_4753 0.18 0.5