Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4745

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4744: 13112 - HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994, at 906003 to 908213 13112 mRNA_4745: 13113 - K17086 TM9SF2_4 transmembrane 9 superfamily member 2/4, at 908739 to 911438 13113 mRNA_4746: 13114 - Hypothetical Protein, at 911729 to 913359 13114

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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907,773 - 13112 mRNA_4744 0.80 -1.0
907,807 - 13112 mRNA_4744 0.82 -0.9
907,816 + 13112 mRNA_4744 0.82 -0.0
907,949 + 13112 mRNA_4744 0.88 -0.6
908,191 - -0.5
908,288 + -1.1
908,444 + 0.2
908,605 + 0.4
908,674 + -0.3
908,682 - 1.3
908,827 + 1.6
908,963 + -0.9
909,068 + 13113 mRNA_4745 0.12 -1.2
909,151 - 13113 mRNA_4745 0.15 -1.4
909,331 + 13113 mRNA_4745 0.22 -0.8
909,477 - 13113 mRNA_4745 0.27 -1.3
909,602 + 13113 mRNA_4745 0.32 -0.6
909,607 + 13113 mRNA_4745 0.32 1.0
909,654 + 13113 mRNA_4745 0.34 0.5
909,710 - 13113 mRNA_4745 0.36 -0.5
909,801 - 13113 mRNA_4745 0.39 -0.3
909,816 - 13113 mRNA_4745 0.40 -1.0
909,850 + 13113 mRNA_4745 0.41 0.2
909,897 - 13113 mRNA_4745 0.43 -0.9
909,974 - 13113 mRNA_4745 0.46 0.6
909,980 - 13113 mRNA_4745 0.46 -1.5
910,011 + 13113 mRNA_4745 0.47 -0.0
910,117 + 13113 mRNA_4745 0.51 -0.2
910,278 + 13113 mRNA_4745 0.57 1.6
910,315 - 13113 mRNA_4745 0.58 -0.1
910,335 - 13113 mRNA_4745 0.59 1.9
910,585 - 13113 mRNA_4745 0.68 0.2
910,627 - 13113 mRNA_4745 0.70 -0.6
910,935 + 13113 mRNA_4745 0.81 -0.2
911,021 - 13113 mRNA_4745 0.85 -0.9
911,092 + 13113 mRNA_4745 0.87 -0.6
911,287 + 0.6
911,300 + 1.2
911,352 - 0.7
911,442 + 0.8
911,475 - 0.5
911,482 + -1.0
911,578 + 0.2
911,580 - 0.6
911,591 - 1.9
911,595 + 1.6
911,598 - 0.3
911,599 + 2.4
911,613 - 1.3
911,630 + -1.2
911,754 - -0.2
911,759 - -1.7
911,760 + 1.1
911,782 - 3.3
911,782 + 0.3
911,811 + -2.2
911,871 + 1.1
912,027 + 13114 mRNA_4746 0.18 -1.4
912,071 - 13114 mRNA_4746 0.21 -1.7
912,085 - 13114 mRNA_4746 0.22 -0.9
912,220 - 13114 mRNA_4746 0.30 0.3
912,332 - 13114 mRNA_4746 0.37 1.2