Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4717

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4717: 13085 - BLAST putative proteasome regulatory subunit 12 [Rhizoctoni..., at 844086 to 846101 13085 mRNA_4718: 13086 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSitePatterns-Thaumatin family signature.-PS00316,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 846943 to 849026 13086

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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843,134 - -0.3
843,245 + -2.5
843,258 + 0.6
843,374 - 0.3
843,400 + -0.5
843,408 + -0.6
843,413 + 2.2
843,553 - 0.1
843,572 + 1.2
843,584 - -1.3
843,676 - 1.8
843,708 + 0.8
843,979 + 0.6
844,109 - -1.6
844,159 + 0.9
844,300 + 13085 mRNA_4717 0.11 -3.0
844,403 - 13085 mRNA_4717 0.16 1.9
844,428 + 13085 mRNA_4717 0.17 -0.5
844,477 + 13085 mRNA_4717 0.19 -1.3
844,608 + 13085 mRNA_4717 0.26 1.4
845,186 - 13085 mRNA_4717 0.55 -1.2
845,460 - 13085 mRNA_4717 0.68 -0.3
845,470 - 13085 mRNA_4717 0.69 2.1
845,653 + 13085 mRNA_4717 0.78 2.6
845,756 + 13085 mRNA_4717 0.83 -0.6
845,760 - 13085 mRNA_4717 0.83 1.0
845,781 + 13085 mRNA_4717 0.84 0.8
845,888 + 13085 mRNA_4717 0.89 0.4
846,034 + -1.4
846,037 - 0.6
846,048 + -0.7
846,250 - -1.3
846,365 - 0.1
846,479 - 2.1
846,495 + -1.1
846,513 + 0.0
846,598 - 0.3
846,617 + 0.2
846,627 - 0.5
846,630 - 0.6
846,645 + -0.1
846,649 + -1.8
846,660 + -0.2
846,782 - 1.2
846,785 - 2.3
846,794 - 0.1
846,812 - -1.5
846,919 - 1.3
847,070 - 0.7
847,094 - 2.7