Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4715

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4714: 13082 - K01183 E3.2.1.14 chitinase, at 838359 to 840435 13082 mRNA_4715: 13083 - KOG1730 Thioredoxin-like protein, at 840551 to 841550 13083 mRNA_4716: 13084 - SUPERFAMILY--SSF55753, at 841773 to 842668 13084

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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839,580 + 13082 mRNA_4714 0.59 0.9
839,619 + 13082 mRNA_4714 0.61 -2.4
839,768 + 13082 mRNA_4714 0.68 0.3
839,872 - 13082 mRNA_4714 0.73 0.7
839,881 + 13082 mRNA_4714 0.73 0.4
840,191 - 13082 mRNA_4714 0.88 0.7
840,481 - -0.3
840,511 - 1.2
840,650 + -0.1
840,780 + 13083 mRNA_4715 0.23 0.4
841,057 + 13083 mRNA_4715 0.51 -0.9
841,060 + 13083 mRNA_4715 0.51 -0.5
841,237 + 13083 mRNA_4715 0.69 2.3
841,369 - 13083 mRNA_4715 0.82 0.6
841,376 + 13083 mRNA_4715 0.82 1.4
841,508 + -0.3
841,777 + -2.6
841,792 + -1.3
841,799 - -1.6
841,801 + -0.6
841,945 - 13084 mRNA_4716 0.19 -0.6
841,949 - 13084 mRNA_4716 0.20 0.7
841,953 - 13084 mRNA_4716 0.20 -0.5