Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4701

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4700: 13068 - BLAST putative mannoprotein [Rhizoctonia solani 123E], at 802870 to 804709 13068 mRNA_4701: 13069 - HMMPfam-Asp/Glu/Hydantoin racemase-PF01177, at 805189 to 806290 13069 mRNA_4702: 13070 - K00870 E2.7.1.37 protein kinase, at 806488 to 808596 13070

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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804,357 - 13068 mRNA_4700 0.81 0.4
804,361 + 13068 mRNA_4700 0.81 0.1
804,381 - 13068 mRNA_4700 0.82 -2.5
804,510 + 13068 mRNA_4700 0.89 -0.5
804,518 - 13068 mRNA_4700 0.90 -0.0
804,525 + 13068 mRNA_4700 0.90 0.3
804,634 - 0.1
804,660 - 0.2
804,672 + 1.8
804,678 - 0.4
804,791 - 0.2
804,804 - -2.1
804,816 - -0.6
804,821 + -0.1
804,821 + -0.1
804,822 - -0.3
804,826 + -3.8
804,831 + 0.7
804,839 + 0.5
804,841 - -2.6
804,847 + 1.2
804,850 - 1.3
804,858 + -0.9
804,863 + -0.3
804,878 - -1.2
804,888 - 0.0
804,895 + 0.1
805,036 - 1.4
805,045 - 0.6
805,045 + 0.6
805,054 + 1.5
805,064 + -0.9
805,068 - -0.6
805,071 + -1.5
805,084 + -0.3
805,086 + -0.0
805,088 - -0.2
805,110 + -1.2
805,142 - 0.0
805,161 - 1.1
805,181 - -2.1
805,225 + 0.1
805,242 - 3.2
805,257 + 1.2
805,267 - -0.4
805,274 + 0.2
805,276 - -1.6
805,278 - -1.0
805,284 + 0.0
805,289 + 0.4
805,293 + 1.4
805,295 - -0.2
805,413 - 13069 mRNA_4701 0.20 0.6
805,440 - 13069 mRNA_4701 0.23 -1.3
805,842 - 13069 mRNA_4701 0.59 1.2
805,948 + 13069 mRNA_4701 0.69 -0.5
806,179 - 13069 mRNA_4701 0.90 0.5
806,253 - 2.6