Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4690

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4689: 13057 - Hypothetical Protein, at 781177 to 782706 13057 mRNA_4690: 13058 - HMMPfam-Heterokaryon incompatibility protein Het-C-PF07217, at 783339 to 787092 13058 mRNA_4691: 13059 - Hypothetical Protein, at 787368 to 788152 13059

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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782,881 - 1.7
783,059 - 1.5
783,357 - -1.1
784,037 + 13058 mRNA_4690 0.19 -0.5
784,165 + 13058 mRNA_4690 0.22 0.1
784,480 - 13058 mRNA_4690 0.30 0.9
784,516 + 13058 mRNA_4690 0.31 -2.4
784,641 + 13058 mRNA_4690 0.35 0.8
785,164 - 13058 mRNA_4690 0.49 -0.1
785,305 + 13058 mRNA_4690 0.52 -1.6
785,316 - 13058 mRNA_4690 0.53 -1.7
785,548 + 13058 mRNA_4690 0.59 -0.2
785,633 - 13058 mRNA_4690 0.61 -0.4
785,787 - 13058 mRNA_4690 0.65 0.5
785,793 - 13058 mRNA_4690 0.65 -0.9
786,105 - 13058 mRNA_4690 0.74 -0.1
786,106 + 13058 mRNA_4690 0.74 -0.5
786,530 - 13058 mRNA_4690 0.85 0.3
786,824 + 1.5
786,942 - 0.4
786,963 + -1.7
786,971 - 0.7
786,979 - -0.7
786,983 + 0.4
786,996 - -0.3
786,996 - -0.8
787,129 - -1.2
787,132 + -1.8
787,136 - -0.2
787,137 - 0.4
787,149 - -0.0
787,154 + -0.9
787,160 + 1.1
787,175 - 0.3
787,267 - -0.0
787,274 - 0.3
787,274 - -0.5
787,277 + 0.5
787,279 + 0.8
787,282 - 0.6
787,300 - -0.1
787,300 - 0.9
787,328 + 0.2
787,337 - 0.5
787,463 + 13059 mRNA_4691 0.12 -0.1
787,586 + 13059 mRNA_4691 0.28 0.2
787,603 + 13059 mRNA_4691 0.30 2.3
787,606 + 13059 mRNA_4691 0.30 0.7
788,025 - 13059 mRNA_4691 0.84 1.3