Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4681

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4681: 13049 - K01539 ATP1A sodium/potassium-transporting ATPase subunit alpha, at 759600 to 763345 13049 mRNA_4682: 13050 - HMMPfam-Tim44-like domain-PF04280,SMART--SM00978,SUPERFAMILY--SSF54427, at 764106 to 764879 13050

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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758,719 - 0.4
758,725 + -0.1
758,726 - -1.6
758,728 + 0.0
758,744 + -0.2
758,891 + 1.6
759,001 + 1.7
759,003 - -1.0
759,015 + 0.0
759,027 - -1.7
759,029 - 1.6
759,031 - -1.2
759,158 - -2.3
759,166 + -0.3
759,185 + 0.3
759,214 - 0.1
759,292 - -0.9
759,299 - -1.2
759,335 - 0.6
759,340 - 2.3
759,343 + 2.1
759,357 + -0.0
759,365 + -0.6
760,062 + 13049 mRNA_4681 0.12 -1.8
760,215 + 13049 mRNA_4681 0.16 1.5
760,818 - 13049 mRNA_4681 0.33 0.8
761,219 - 13049 mRNA_4681 0.43 0.4
762,314 + 13049 mRNA_4681 0.72 -0.2
762,564 + 13049 mRNA_4681 0.79 0.9
762,742 + 13049 mRNA_4681 0.84 1.7
762,754 + 13049 mRNA_4681 0.84 -0.2
762,873 + 13049 mRNA_4681 0.87 1.3
762,883 + 13049 mRNA_4681 0.88 -0.9
762,887 + 13049 mRNA_4681 0.88 -0.4
763,284 + -0.1
763,324 + -1.4
763,432 + -2.8
763,469 - 1.8
763,587 + -1.9
763,608 - 0.3
763,890 - -2.2
763,904 + 1.0