Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4640

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4639: 13007 - KOG3469 Cytochrome c oxidase, subunit VIa/COX13, at 665005 to 666466 13007 mRNA_4640: 13008 - KOG1399 Flavin-containing monooxygenase, at 666733 to 668799 13008 mRNA_4641: 13009 - KOG1161 Protein involved in vacuolar polyphosphate accumulation, contains SPX domain, at 669193 to 672697 13009

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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665,845 - 13007 mRNA_4639 0.57 -1.0
665,974 - 13007 mRNA_4639 0.66 0.8
665,997 - 13007 mRNA_4639 0.68 -0.3
666,126 + 13007 mRNA_4639 0.77 0.8
666,260 + 13007 mRNA_4639 0.86 -0.9
666,556 + -0.6
667,259 - 13008 mRNA_4640 0.25 0.2
667,377 - 13008 mRNA_4640 0.31 -1.2
667,415 + 13008 mRNA_4640 0.33 -2.1
667,416 + 13008 mRNA_4640 0.33 0.1
667,433 - 13008 mRNA_4640 0.34 -1.5
667,574 - 13008 mRNA_4640 0.41 1.2
667,657 - 13008 mRNA_4640 0.45 -0.1
667,687 - 13008 mRNA_4640 0.46 0.4
667,687 - 13008 mRNA_4640 0.46 -0.0
668,025 + 13008 mRNA_4640 0.63 -2.2
668,137 - 13008 mRNA_4640 0.68 -0.2
668,138 + 13008 mRNA_4640 0.68 2.0
668,314 + 13008 mRNA_4640 0.76 -2.7
668,398 - 13008 mRNA_4640 0.81 -0.2
668,592 + 13008 mRNA_4640 0.90 0.4
668,746 - -1.2
668,747 - -0.8
668,878 + 0.3
668,898 - 0.1
669,789 + 13009 mRNA_4641 0.17 -0.7