Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4639

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4638: 13006 - HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839,SUPERFAMILY--SSF52266, at 663192 to 664874 13006 mRNA_4639: 13007 - KOG3469 Cytochrome c oxidase, subunit VIa/COX13, at 665005 to 666466 13007 mRNA_4640: 13008 - KOG1399 Flavin-containing monooxygenase, at 666733 to 668799 13008

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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664,058 + 13006 mRNA_4638 0.51 0.8
664,311 + 13006 mRNA_4638 0.66 0.5
664,505 - 13006 mRNA_4638 0.78 -0.4
664,527 - 13006 mRNA_4638 0.79 -1.3
664,637 - 13006 mRNA_4638 0.86 -0.7
664,641 + 13006 mRNA_4638 0.86 0.1
664,647 - 13006 mRNA_4638 0.86 -1.2
664,805 - 1.1
664,816 + -0.7
664,826 + -1.5
664,898 - -0.5
664,932 - -1.4
664,949 - -0.8
664,974 - -1.2
665,006 + -0.2
665,069 - -0.7
665,091 - -0.8
665,333 + 13007 mRNA_4639 0.22 0.3
665,367 - 13007 mRNA_4639 0.25 -0.3
665,371 - 13007 mRNA_4639 0.25 2.8
665,394 - 13007 mRNA_4639 0.27 -2.4
665,405 - 13007 mRNA_4639 0.27 -0.4
665,409 + 13007 mRNA_4639 0.28 0.9
665,559 + 13007 mRNA_4639 0.38 -0.7
665,845 - 13007 mRNA_4639 0.57 -1.0
665,974 - 13007 mRNA_4639 0.66 0.8
665,997 - 13007 mRNA_4639 0.68 -0.3
666,126 + 13007 mRNA_4639 0.77 0.8
666,260 + 13007 mRNA_4639 0.86 -0.9
666,556 + -0.6
667,259 - 13008 mRNA_4640 0.25 0.2
667,377 - 13008 mRNA_4640 0.31 -1.2
667,415 + 13008 mRNA_4640 0.33 -2.1
667,416 + 13008 mRNA_4640 0.33 0.1
667,433 - 13008 mRNA_4640 0.34 -1.5