Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4628

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4627: 12995 - K16196 EIF2AK4 eukaryotic translation initiation factor 2-alpha kinase 4, at 632706 to 638769 12995 mRNA_4628: 12996 - KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily), at 639260 to 641629 12996 mRNA_4629: 12997 - K11971 RNF14, ARA54 E3 ubiquitin-protein ligase RNF14, at 642577 to 644729 12997

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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638,545 - -1.3
638,789 + -0.8
638,800 - -1.9
638,817 - -0.1
638,826 - 0.5
638,952 - 0.7
638,958 + -2.2
639,112 + -0.2
639,403 - -0.2
639,424 - 0.2
639,426 + -1.6
639,427 + -0.1
639,540 - 12996 mRNA_4628 0.12 -0.2
639,858 + 12996 mRNA_4628 0.25 0.3
639,900 - 12996 mRNA_4628 0.27 -0.5
640,451 + 12996 mRNA_4628 0.50 -0.7
641,458 + -0.5
641,651 - -2.5
641,744 - -0.7
642,048 - 1.4
642,138 + -1.4
642,353 - -2.4
642,625 + -1.1