Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4627

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4626: 12994 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 630956 to 632424 12994 mRNA_4627: 12995 - K16196 EIF2AK4 eukaryotic translation initiation factor 2-alpha kinase 4, at 632706 to 638769 12995 mRNA_4628: 12996 - KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily), at 639260 to 641629 12996

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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631,992 + 12994 mRNA_4626 0.71 1.1
632,513 + -2.1
632,684 - 1.8
632,836 - -0.7
632,996 + 0.3
633,680 + 12995 mRNA_4627 0.16 -1.3
633,681 + 12995 mRNA_4627 0.16 0.2
633,685 - 12995 mRNA_4627 0.16 -0.9
634,011 + 12995 mRNA_4627 0.22 -2.7
634,131 + 12995 mRNA_4627 0.23 -0.9
634,247 - 12995 mRNA_4627 0.25 -2.5
634,574 - 12995 mRNA_4627 0.31 -0.3
634,710 - 12995 mRNA_4627 0.33 2.0
635,189 + 12995 mRNA_4627 0.41 0.9
635,448 + 12995 mRNA_4627 0.45 -0.9
635,593 - 12995 mRNA_4627 0.48 -0.8
636,689 + 12995 mRNA_4627 0.66 0.8
636,715 - 12995 mRNA_4627 0.66 -0.5
636,934 - 12995 mRNA_4627 0.70 -0.7
637,225 + 12995 mRNA_4627 0.75 -1.1
637,243 - 12995 mRNA_4627 0.75 1.5
637,266 - 12995 mRNA_4627 0.75 -0.3
637,681 + 12995 mRNA_4627 0.82 -0.6
637,888 + 12995 mRNA_4627 0.85 0.3
637,955 - 12995 mRNA_4627 0.87 -0.7
638,002 + 12995 mRNA_4627 0.87 -3.7
638,056 - 12995 mRNA_4627 0.88 -0.8
638,124 + 12995 mRNA_4627 0.89 -1.1
638,545 - -1.3
638,789 + -0.8
638,800 - -1.9
638,817 - -0.1
638,826 - 0.5
638,952 - 0.7
638,958 + -2.2
639,112 + -0.2
639,403 - -0.2
639,424 - 0.2
639,426 + -1.6
639,427 + -0.1
639,540 - 12996 mRNA_4628 0.12 -0.2